Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0479 ATGAAGAGGTTGGTCGAAATTTGTTTTCTCGGTCGCGGGAAAGTGAAGAGTTGTGAGATTCATTGCTCGTCTTTCTCGAAAATGGGATCGGAAGCAACACTGTGTGTTCCAAAATGGGGATCCGAGCCTTCCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTAGGACCAATGGTCTACGGTTGCTTGTACTGTGCTCGCTCATACCAGAAAACCCTCTCCACTTTGAGTTTCGCAGATTCTAAGACACTAAAAGAAGAGAAGAGGGAAGAGTTATTTGAAGCTTTGAAGGAAAATGATTCGATTGGATGGGCTGTTGATGTCATTGATCCGAGGGAACTCTCCGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAAATATCACATGACTCTGCCATGGGCCTCATTGATAGGGTACTCAAAATGGGAGTGCTTCTAACTGAGGTTTATGTAGATACAGTTGGAGATGCAGGGAAATATGAAGCTAAGCTGTCTAAGATTTTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTTAGTGGTGCAAGCATAGTTGCAAAGGTCACTAGAGACCGAGCTGTAAGAGAATGGGTGCTTGATGAGACTGCTGAAAACATGCACAGGAACTTTGGTTCTGGATATCCTGGAGATCCCCAAACCAAGTCTTGGCTAAAAGATCACAGACATTATATCTTTGGATTTCCAAGTTTGGTCCGATTTAGTTGGGGAACTTGCACTACTTATTTTAAAGATGGCGCGGAAGTGGAGTCTGACAAGGATGAAGATGGTGGTAGCAATAATCAAAACGGCAAGCGGCAATTGAAATTAAGCAATGTGGGTTTCACATCCAAAAGGAGAAGTGATGAAATAGAATCAAGTGGTAAAGGACGCAACTTGCAATTGCTGATACACATACACATGAGTCATGACTTAGCACTTTCCACCCATATAGAATCTGTTGCAGTTGGCAGCACTATGGTGATGTTGGCGATTATTGTTTCCAGCCCCGGCTGCATAGACAGGTATAAGTCCCGCACCTCCATGTGTATTAGGCAAGCTTGA 1095 0.432 MKRLVEICFLGRGKVKSCEIHCSSFSKMGSEATLCVPKWGSEPSIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLSTLSFADSKTLKEEKREELFEALKENDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYVDTVGDAGKYEAKLSKIFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETAENMHRNFGSGYPGDPQTKSWLKDHRHYIFGFPSLVRFSWGTCTTYFKDGAEVESDKDEDGGSNNQNGKRQLKLSNVGFTSKRRSDEIESSGKGRNLQLLIHIHMSHDLALSTHIESVAVGSTMVMLAIIVSSPGCIDRYKSRTSMCIRQA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0479 364 Gene3D - 23 215 IPR036397 GO:0003676
Lal13g0479 364 CDD RNase_HII_eukaryota_like 46 265 - -
Lal13g0479 364 Gene3D Ribonuclease hii. Domain 2 216 265 IPR023160 GO:0004523
Lal13g0479 364 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 43 265 IPR024567 GO:0004523
Lal13g0479 364 MobiDBLite consensus disorder prediction 267 289 - -
Lal13g0479 364 TIGRFAM TIGR00729: ribonuclease HII 45 258 IPR004649 GO:0004523|GO:0016070
Lal13g0479 364 Pfam Ribonuclease HII 46 256 IPR024567 GO:0004523
Lal13g0479 364 PANTHER RIBONUCLEASE 32 309 - -
Lal13g0479 364 PANTHER RIBONUCLEASE H2 SUBUNIT A 32 309 IPR001352 GO:0003723|GO:0004523
Lal13g0479 364 SUPERFAMILY Ribonuclease H-like 45 261 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0479 Lal-Chr13 3104369 3110166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0479 31 308 Core DNA Replication Machinery Family AT2G25100 65.480 1.14e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0479 K10743 - gmx:100779875 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0479 13 3104369 3110166 Lal24g0388 24 2803459 2810133 LSH