Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0474 ATGTTTCAGGATTCCACCACTATGCCAACGCGGTGGCCAACTCAGCCGTGTCGGTGGACTCACCACCAGGACAAGCTATTCGAGCGAGCTTTGTTGGTCGTTCCTGAGGACGCGCCGGACCGGTGGGTGAAGATTGCTGAGCTAGTACCAGGTAAGTCGGTGGCGGAGGTCAAGGAGCACTACGATGACTTGGTGCACGATGTTTTTGAGATCGATTCGGGTCGGGTGTCGGTGCCGGAGTACACTGATGAATTGGCGGCGGTGAGTGGTGGAAGTGGAAATGGAAGGTTGTCGTCGTGGGACTCTTCTAATCAGATATCGTTTGGGTCAAAAACTAAACATGGTGATAACGAGAGGAAGAAAGGAACGCCATGGACGGAAGAGGAACACAAGCTATTTCTCGTTGGGCTAAGTAAATTTGGCAAGGGAGATTGGAGAAGCATTTCAAGGAATGCTGTTGTGACAAGAACACCGACTCAAGTTGCTAGTCATGCACAGAAATACTTCCTTCGCCAAAAGTCGGTGAAGAAAGAGAGGAAAAGGTCAAGCATCCATGACATAACCACAGTGGATAGCAAATCCGTGCCTGCACCAATGGATCAGAATTGGGTTCCTCCTCCGGGCGGTCCAGTGCAGCAGTTACAGGAAACGCAGTTTAACCCAAGAAACAATTTTCAAAATCAAATGGGTGGGGTTGGGTATTCAAACTATGGGTTTTGA 720 0.4958 MFQDSTTMPTRWPTQPCRWTHHQDKLFERALLVVPEDAPDRWVKIAELVPGKSVAEVKEHYDDLVHDVFEIDSGRVSVPEYTDELAAVSGGSGNGRLSSWDSSNQISFGSKTKHGDNERKKGTPWTEEEHKLFLVGLSKFGKGDWRSISRNAVVTRTPTQVASHAQKYFLRQKSVKKERKRSSIHDITTVDSKSVPAPMDQNWVPPPGGPVQQLQETQFNPRNNFQNQMGGVGYSNYGF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0474 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Lal13g0474 239 ProSiteProfiles Myb-like domain profile. 18 65 IPR001005 -
Lal13g0474 239 CDD SANT 124 169 IPR001005 -
Lal13g0474 239 Gene3D - 15 78 - -
Lal13g0474 239 MobiDBLite consensus disorder prediction 92 111 - -
Lal13g0474 239 MobiDBLite consensus disorder prediction 89 124 - -
Lal13g0474 239 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 239 IPR043363 -
Lal13g0474 239 SMART sant 121 171 IPR001005 -
Lal13g0474 239 SMART sant 15 67 IPR001005 -
Lal13g0474 239 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Lal13g0474 239 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 14 239 - -
Lal13g0474 239 Gene3D - 123 176 - -
Lal13g0474 239 CDD SANT 18 61 IPR001005 -
Lal13g0474 239 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Lal13g0474 239 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Lal13g0474 239 SUPERFAMILY Homeodomain-like 119 174 IPR009057 -
Lal13g0474 239 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Lal13g0474 239 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0474 Lal-Chr13 3079528 3081754 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g0474 Myb_DNA-binding 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0474 - - gmx:547481 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0478 12 3437075 3439368 Lal13g0474 13 3079528 3081754 LSH
Lal13g0474 13 3079528 3081754 Lal24g0385 24 2791822 2794547 LSH