Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0472 ATGCTCCTTCTTCCTATAAGCTGCATGCTTTTAATGTTCCTCCTCCTCAGTTCTTCTTTCTCTTTCCAATTCAAAGCTTCTCTCAACCTCTCTTTGCCCCACCAACACCCTCACCCTCAAACAGTTGTTAACGAACTTCAACGGAAAGTCAATGTATCATTATCCAGAAGAGAACTTCTCTCAAAAGACCAAGCATGCCTAACCGGAAATCCAATCGACGACTGCTGGCGGTGTGACCCAAACTGGGCCGCAAACCGCCAGCGTCTCGCCGATTGTGGAATTGGGTTCGGCCGAGACGCAATAGGTGGAAAAGGTGGCCAATTCTACATAGTAACAGACTCATCAGACACCAACCCATCAAACCCTATCCCAGGTACACTCCGTCACGCAGTAATCCAAGACGAGCCCTTATGGATAATATTCTCATCCGACATGACAATCAATCTTAAACACGAACTCATCTTCAACAGCTTCAAAACCATAGACGGTCGTGGCACAAACGTGCACGTGACAGGCAACGGTTGCATAACACTACAATACATTTCCAACGTGATTATCCACAACATCCACGTGCACCATTGCAAACCCTCAGGTAACTCTATCATACGTTCAAGCCCAACCCACGTTGGGTTCCGTGGCCTATCAGACGGTGACGGAATTTCAATCTACAGCGGTCGTAAAATCTGGATAGACCATTGCTCATTATCTTATTGTACGGACGGTTTGATCGATGCAATAATGGGGTCAACAGGGATAACAATTTCGAATAACCACTTTGCTCATCACGATGAAGTGATGTTATTGGGACACGATGATAGGTACTTGCCCGATAAGGGGATGCAGGTTACAATTGTTTTCAACCATTTCGGAGAGGGTTTGGTGCAGAGAATGCCAAGGTGTAGACATGGATATATACACGTGGCGAATAATGATTTCACACAGTGGGAGATGTATGCTATTGGTGGTAGTGCTTCTCCAACCATTAACAGTCAGGGTAACCGTTACACTGCTCCCTCCGATCCTAATTCAAAAGAGGTGACAAAGCGCGTGGACACAAACGAGAATGAGTGGGGTGATTGGAATTGGAAGACAGAAGGGGACATAATGGTAAATGGAGCATTCTTTGTCCCTTCAGGCGCTGGGGCCAGTGCTCAGTACGCAGAGGCCACCAGTCTACAACCCAAATCCGCCGTGCAAATTGACCAGCTCACCATGTATTCCGGCGTCTTCGGTGATCCCAGGGATAATGGAGATTTATATCCCGGCTTCAATGGAGGTGGGACCGTGATGGAAAGCGGCGGGACGGTGACGGGAAGCAGCAAGGGCAACAATGCGGCAGGGTCGGGCAGTGGTGACGATGACAACTTCTTTGGGATGATATTCGGAGGTGGTAGCAGCCAAGCAGCGTCACCATCACCATCACCATCACCATCACCCTTCCCATTCAATGTATTTGTTTCAACTTTTTTGTCTCTCTTAATTACTTTCATTGTGGATACTAGGACCAACCATGTTATTCTATTATCATTACTATGA 1536 0.4714 MLLLPISCMLLMFLLLSSSFSFQFKASLNLSLPHQHPHPQTVVNELQRKVNVSLSRRELLSKDQACLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAIGGKGGQFYIVTDSSDTNPSNPIPGTLRHAVIQDEPLWIIFSSDMTINLKHELIFNSFKTIDGRGTNVHVTGNGCITLQYISNVIIHNIHVHHCKPSGNSIIRSSPTHVGFRGLSDGDGISIYSGRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDRYLPDKGMQVTIVFNHFGEGLVQRMPRCRHGYIHVANNDFTQWEMYAIGGSASPTINSQGNRYTAPSDPNSKEVTKRVDTNENEWGDWNWKTEGDIMVNGAFFVPSGAGASAQYAEATSLQPKSAVQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVMESGGTVTGSSKGNNAAGSGSGDDDNFFGMIFGGGSSQAASPSPSPSPSPFPFNVFVSTFLSLLITFIVDTRTNHVILLSLL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0472 511 SMART amb_all 144 341 IPR002022 -
Lal13g0472 511 Pfam Pectate lyase 152 333 IPR002022 -
Lal13g0472 511 SUPERFAMILY Pectin lyase-like 70 385 IPR011050 -
Lal13g0472 511 PANTHER PECTATE LYASE 18-RELATED 9 431 IPR045032 GO:0030570
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Lal13g0472 511 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Lal13g0472 511 Gene3D - 69 411 IPR012334 -
Lal13g0472 511 PANTHER PECTATE LYASE 9 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0472 Lal-Chr13 3050400 3053564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0472 28 416 Polysaccharide Lyase AT3G54920 65.594 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0472 K01728 - gmx:100808438 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0472 13 3050400 3053564 Lal13g0472 13 3050400 3053564 ECH
Lal12g0474 12 3394264 3399096 Lal13g0472 13 3050400 3053564 LSH
Lal13g0472 13 3050400 3053564 Lal24g0380 24 2743766 2746805 LSH