Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0462 ATGAAGGTTTTTGTCAAGACTTTGAAAGGCACTCACTTCGAAATTGAAGTCAAGCCCGAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACGGTTCAGGGTGCAGATGTCTATCCTGCTACCTTGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGCTACAACCTTGGAGGAAAATAAAGTATCTGAAAATAGTTTCATTGTAATAATGCTATCAAAGAATAAGAGTACATCTGGTGAAGTGTCTGCCACTTCAACTGCACCTTCAGTGAAGACCCCACAAATAAGTGCAGCTCCTGCTGCAACTCCCCCAGTGTCAGTAGCACCTCAAGCTCCTGCTGCAACTCCCCCAGTGTCAGTAGCACCTCAAGCTCCTGCTGCAACTGTACCACCACCTGTACCTGTTAGTGCTCTTGCTCCTTCAACTGCTCCTGGTTCTATACCTACGAGCACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCAGCGTCAAATCTGGTTGCTGGAACCAACTTGGAGGAAATTATTCAGCAAATCCTTGATATGGGTGATGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGGGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATATCTGTATTCAGGTATTCCTGAGCAAGCTGAAGCACCCGTTGTGGCCCCAGTGCCTTCAAGTGCACAACCTGCTAATCCTACAGCTCCTGCTCCACAAGCAGCACAACCATCCCCTGCTACCTTAGGTGGACCTAACTCACTACCTCTAGACCTCTTCCCCCAGGGTCTCCCAAATGCTGGTTCTGGTGCTGCTGGTGCTGGCTCTTTGGATTTTCTGCGCAACAGTCAACAATTCCAAGCGTTGCGGTCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAGCAGAATCCCCAACTTATGAGATTGATTCAAGATCATCAAGCTGACTTTCTTCGCCTGATAAATGAACCTATGGAAGGTGGCGAAGGGGATTTATTGGGGCAGCTGGCTGCTGGCGTGCCACAAGCAGTAACTGTCACCCCAGAAGAACGTCAGGCAATTGAACGTCTTGAAGCAATGGGTTTCGATCGTGCAACTGTGTTGGAGGTTTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGATGAACAATAG 1224 0.4739 MKVFVKTLKGTHFEIEVKPEDTVSEVKKNIETVQGADVYPATLQMLIHQGKVLKDATTLEENKVSENSFIVIMLSKNKSTSGEVSATSTAPSVKTPQISAAPAATPPVSVAPQAPAATPPVSVAPQAPAATVPPPVPVSALAPSTAPGSIPTSTAVEGSDIYGQAASNLVAGTNLEEIIQQILDMGDGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPVVAPVPSSAQPANPTAPAPQAAQPSPATLGGPNSLPLDLFPQGLPNAGSGAAGAGSLDFLRNSQQFQALRSMVQANPQILQPMLQELGKQNPQLMRLIQDHQADFLRLINEPMEGGEGDLLGQLAAGVPQAVTVTPEERQAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0462 407 SMART CBM 279 322 IPR006636 -
Lal13g0462 407 SMART uba_6 362 399 IPR015940 -
Lal13g0462 407 SMART uba_6 175 215 IPR015940 -
Lal13g0462 407 Gene3D - 168 218 - -
Lal13g0462 407 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lal13g0462 407 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Lal13g0462 407 MobiDBLite consensus disorder prediction 227 270 - -
Lal13g0462 407 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 406 - -
Lal13g0462 407 TIGRFAM rad23: UV excision repair protein Rad23 1 405 IPR004806 GO:0006289
Lal13g0462 407 Gene3D - 271 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal13g0462 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 359 400 IPR015940 -
Lal13g0462 407 Gene3D - 1 80 - -
Lal13g0462 407 PRINTS DNA repair protein Rad23 signature 307 329 IPR004806 GO:0006289
Lal13g0462 407 PRINTS DNA repair protein Rad23 signature 356 372 IPR004806 GO:0006289
Lal13g0462 407 PRINTS DNA repair protein Rad23 signature 373 387 IPR004806 GO:0006289
Lal13g0462 407 PRINTS DNA repair protein Rad23 signature 388 403 IPR004806 GO:0006289
Lal13g0462 407 Pfam UBA/TS-N domain 362 397 IPR015940 -
Lal13g0462 407 Pfam UBA/TS-N domain 175 213 IPR015940 -
Lal13g0462 407 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lal13g0462 407 Gene3D - 354 401 - -
Lal13g0462 407 MobiDBLite consensus disorder prediction 81 130 - -
Lal13g0462 407 Pfam XPC-binding domain 281 336 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lal13g0462 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 173 216 IPR015940 -
Lal13g0462 407 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 406 - -
Lal13g0462 407 CDD UBA1_Rad23_plant 169 218 - -
Lal13g0462 407 MobiDBLite consensus disorder prediction 108 130 - -
Lal13g0462 407 MobiDBLite consensus disorder prediction 81 99 - -
Lal13g0462 407 SUPERFAMILY XPC-binding domain 278 343 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lal13g0462 407 SUPERFAMILY UBA-like 341 405 IPR009060 GO:0005515
Lal13g0462 407 SUPERFAMILY UBA-like 173 225 IPR009060 GO:0005515
Lal13g0462 407 CDD Ubl_Rad23 1 74 - -
Lal13g0462 407 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0462 Lal-Chr13 2979890 2983707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0462 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 1.21e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0462 13 2979890 2983707 Lal24g0373 24 2706654 2710868 LSH