Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0457 ATGAGTTATTCAACGACCAAAAACGTGCCCGACTCAGTTGCTGGGAAAACTGCAAGAGCTTGTGATAGCTGCATAAGAAAGAGGGCTCGCTGGTATTGTGCTGCTGATGATGCTTTTTTGTGTCAAGCTTGTGACTCTTTTGTTCATTATGCTAATCCTTTGGCTCGTAGACATGAAAGACTCCGTTTGAAAACGGCGTCATTCAAGTTTTTAAATGAACTCAATAACTATGCTCCTCCTTCTTGGCACCACAAGAAAGCTCGAACACCAAGACAAGGGAAGCAGAGCTCTAAGTACTCGATTGGAAACAATAACAACAACCCTTTTCATCTTGTTCCGGAAGTTGGATTTGATGAAGTGAATTCCCATGATGAGAACGAGGAGCAGCTTCTTTATCGGGTTCCTAGATTTGAACTCTTATGCAGTACTCCTTCTTCTGTTACTTCAGGTGAAGTTGTTGAAAAAAGCAAGGTTTCATGGGATTATGATGGTAATAACCATGATGGGGTGGAAAACATGCTTGGTTCTGTTCCATCTGAGATTGAACTTGCTGAGTTTGCTGCTGATGTTGAAACCTTGTTGGGTAAGGGACTTGAAAATGAGTGCATAGGGATGGAAGAGTTAGGGTTGGTTGATACAAAAGAAGAAGCGTCGTGGGAGTGTTCTGTGGGTAGTGGAGGGAAGAAGTTGAAGTTTGAAGAGGAAGAGAGAAATGAAGTAGGAGATAAGATGATGATGGAGGGGATAGAAAGAGAAGCGTTTGAATTGAGCTTTCGTTATGATATTTCTAATGAAACAAGTGAGGAGGTGAAGGAGAAGGTTGCTTTTGATGTGGAGAATGATGGAGAAGTGAAAGAAAATGACGAAGAAAAGAGGAAGAAGATATTGCTGCAGCTAGATTATGATGCAGTGATTAGTGCCTGGGATAGCCAAAAGTGTCCCTGGACTACTGGTGATAAACCAAATTTGGACCCTGATGAGTGTTGGCCTCACTGCATGGGAACTTGTGGAAAGGTGCTTCATTATCCTTATGGTGGATTTATGAGTCATCCAGTTGTTGGAGACGGGGAAAGAGAAGCAAGAGTGTTAAGGTACAGAGAAAAGCGCCGAACAAGGTTTTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGAAGATTTGTGAAGAGGGCTTCCTTTGAAGCACCAACATTTCCTTCGCTAAATAAATAG 1242 0.4211 MSYSTTKNVPDSVAGKTARACDSCIRKRARWYCAADDAFLCQACDSFVHYANPLARRHERLRLKTASFKFLNELNNYAPPSWHHKKARTPRQGKQSSKYSIGNNNNNPFHLVPEVGFDEVNSHDENEEQLLYRVPRFELLCSTPSSVTSGEVVEKSKVSWDYDGNNHDGVENMLGSVPSEIELAEFAADVETLLGKGLENECIGMEELGLVDTKEEASWECSVGSGGKKLKFEEEERNEVGDKMMMEGIEREAFELSFRYDISNETSEEVKEKVAFDVENDGEVKENDEEKRKKILLQLDYDAVISAWDSQKCPWTTGDKPNLDPDECWPHCMGTCGKVLHYPYGGFMSHPVVGDGEREARVLRYREKRRTRFFSKKIRYEVRKLNAEKRPRMKGRFVKRASFEAPTFPSLNK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0457 413 CDD Bbox1_BBX-like 20 63 - -
Lal13g0457 413 SMART bboxneu5 16 63 IPR000315 GO:0008270
Lal13g0457 413 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Lal13g0457 413 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 405 - -
Lal13g0457 413 Pfam CCT motif 358 400 IPR010402 GO:0005515
Lal13g0457 413 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Lal13g0457 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 6 405 - -
Lal13g0457 413 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
Lal13g0457 413 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0457 Lal-Chr13 2925921 2927699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0457 7 400 C2C2-CO-like Transcription Factor Family AT1G25440 45.349 4.25e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lal13g0457 CCT 3.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0457 - - gmx:100817528 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0457 13 2925921 2927699 Lal24g0369 24 2657120 2658961 LSH