Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0450 ATGATGAAGACAATTTCATGTACTGGATTGAGACCAGAAGGGAACCCATTAGACCTTAACAATTTCCCTGATGAATACTCTAGAGATGGCAAACAAGTCCTCGAAGAAAGCTATTCACCAAGTTGCAGGAAAAAGAAAAACGGCGGGAAGGAAGGAAAAGAAGAGTGTGGGAAGGTGTATGAATGTAGATTTTGTTCCCTTAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACATATGAACCGCCACCGCCAAGAGAGGGAAACAGAGACGCTGAATCATGCTCGTCAACTAGTCTTCCGCACCGATCACACCTTTTCTGCACAAGCTGCGCCTCACCTAGGATGCTGTAAACCAATAGGAGGAGCAGGAACAGGAGGAGGTTATCATCCATCAGGCAACATGGGAGACCCAACAGTACCACCACTGAGATTACCAAGATACTTCTCTGCTTCATCATCCTCAACTCACATTCCTCCTCCACCACCACCACCACCGACTGCACAATATCTCTATGCTTCACCTTCACGCCCACCAGTGTCTTTTCCCTCACACTTCCCCCCACAACATACAGTGAATGATTACTATGTTGGTCATGTTCTTAATCCCATCCACCACAACTACATGAGTGTGGCGGGTTCAGGTGGAGGGGATTCTGATAGTTACACTTGCATTGGTGCACCGGTGGGACAAGGGTTCAGCGGTGGCGGTGGTGGTAAGGATGGGACACTGCAGAATCAGGAGGAAGGGTTGAATTGGGGAAGGAGCTATTCAGGTGCTGCTGCTGGTTCAGCGATCAATCGGTTTCAAGATGGTTTCTAA 819 0.4847 MMKTISCTGLRPEGNPLDLNNFPDEYSRDGKQVLEESYSPSCRKKKNGGKEGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRTDHTFSAQAAPHLGCCKPIGGAGTGGGYHPSGNMGDPTVPPLRLPRYFSASSSSTHIPPPPPPPPTAQYLYASPSRPPVSFPSHFPPQHTVNDYYVGHVLNPIHHNYMSVAGSGGGDSDSYTCIGAPVGQGFSGGGGGKDGTLQNQEEGLNWGRSYSGAAAGSAINRFQDGF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0450 272 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lal13g0450 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Lal13g0450 272 MobiDBLite consensus disorder prediction 1 53 - -
Lal13g0450 272 MobiDBLite consensus disorder prediction 127 170 - -
Lal13g0450 272 Gene3D Classic Zinc Finger 37 112 - -
Lal13g0450 272 MobiDBLite consensus disorder prediction 24 53 - -
Lal13g0450 272 PANTHER ZINC FINGER PROTEIN JAGGED 11 242 IPR045320 GO:0003700
Lal13g0450 272 PANTHER ZINC FINGER PROTEIN JAGGED 11 242 IPR031113 GO:0007275
Lal13g0450 272 SUPERFAMILY beta-beta-alpha zinc fingers 58 88 IPR036236 -
Lal13g0450 272 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0450 Lal-Chr13 2879212 2883147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0450 13 231 C2H2 Transcription Factor Family AT1G13400 45.291 1.05e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g0450 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0450 - - aprc:113871902 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0450 13 2879212 2883147 Lal24g0364 24 2616836 2619137 LSH