Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0448 ATGAGACTTTCTATTTTCTCTCCCCATACTCACCATTGTCACCATTACCCTATCAAACTAAACCATTCTCCATTCACACTTTTCACTCATTCTTCTTCTTCCCCACCAACCAGACTACGATTGCCGAGAATAGACGCCGCCGCTGCCACTACATTCTACCACCACCGCCGTAAAGACAAGGTTGTGGTCATCATGGGCGCCACCGGCTCAGGAAAATCGCGCCTTTCCGTCGACCTCGCCACCCTCTTCTTCCCTTTCTCCGAAATCCTAAACTCTGATAAAATGCAAGTCTACTCCGGTCTCGACATCACCACCAACAAGATCCCCCTCCACCAGCGCCGCGGGGTCACCCACCACCTCCTCGGCGATGTCAATCCCGACGCCGGTGAGTTCTCACCCTCCGACTTCCGCCACCGTGCCGGCGATATTATCTCCGATATCACCAGCAGAAGAAAACTCCCCATCATAGTTGGTGGTTCCAACTCCTTCATCCACGCTCTTCTGGTAGAACGATTCGACCCTGAGTTGAACGTGTTTGACGCTGAGTCATTGTCAACGCCAACATCATCGTCATCACCTGTTATTTCTTCAGAGTTGAGATATAACTGTTGCTTCCTATGGGTAGATGTGTCATTTCCTGTGTTATCAGAATATTTGATAAAACGAGTTGATGACATGCTTGATTCAGGAATGGTAGACGAGTTAGCTCAATTTTTTGACCCACACGCAATAGAAGAAATGAACCGAACCGGGTTGAGAAAAGCGATAGGGGTGCCAGAGTTGGACCGGTATTTTAAAGAGTACCCGCCCGGGTCAGGGGAGGAAGAGGATCGGGTACGGAAGGGTGCATACAAGGAAGCGGTGAGGGCGATTAAGGATAACACGTGTCAGCTAGCGAAGAGACAGATAGAGAAGATTTTAAGGCTGAAAAGGGCCGGGTGGAACCTACAGAGGATTGACGCCACCGACGCGTTTAGGGCGGCGCTGACGTTAGACGATAGGTGGTCCGATATATGGGAGAGGCAGGTATTGGAACCAAGCGTCAATAATTTGAACCGTTTTTTGATGGATTAG 1074 0.4981 MRLSIFSPHTHHCHHYPIKLNHSPFTLFTHSSSSPPTRLRLPRIDAAAATTFYHHRRKDKVVVIMGATGSGKSRLSVDLATLFFPFSEILNSDKMQVYSGLDITTNKIPLHQRRGVTHHLLGDVNPDAGEFSPSDFRHRAGDIISDITSRRKLPIIVGGSNSFIHALLVERFDPELNVFDAESLSTPTSSSSPVISSELRYNCCFLWVDVSFPVLSEYLIKRVDDMLDSGMVDELAQFFDPHAIEEMNRTGLRKAIGVPELDRYFKEYPPGSGEEEDRVRKGAYKEAVRAIKDNTCQLAKRQIEKILRLKRAGWNLQRIDATDAFRAALTLDDRWSDIWERQVLEPSVNNLNRFLMD 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0448 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 245 IPR027417 -
Lal13g0448 357 Pfam IPP transferase 196 303 - -
Lal13g0448 357 Pfam IPP transferase 96 170 - -
Lal13g0448 357 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 212 316 - -
Lal13g0448 357 Gene3D - 58 355 IPR027417 -
Lal13g0448 357 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 51 355 IPR039657 -
Lal13g0448 357 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 4-RELATED 51 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0448 Lal-Chr13 2846796 2847869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0448 200 355 C2H2 Transcription Factor Family AT2G27760 30.000 1.51e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0448 K10760 - gmx:100813761 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0448 13 2846796 2847869 Lal24g0363 24 2586795 2587727 LSH