Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0441 ATGGGGATGGGTTCGAAGATAGAAGGACCATCTACCCCAACAAATCGACGTGATCCTTATGAGGTATTGTCCGTTACAAGGGACTCTACCGATCAAGAAATCAAAACCGCTTACAGAAAGCTAGCTCTCAAGTATCACCCTGACAAAAATGCTAGCAATCCTGAAGCTTCAGAACTATTTAAGGAGGTTGCATACTCTTATACTATCTTGTCGGATCCAGAGAAGAGAAGGCAGTATGATAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATTGATTTATCTAATCTTGGGACTGTCAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTACTTGAAGAAGCTCTGAATGGCACTGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTTACTGGAAAGGTAGAGAAGCAGTGTGCTCATTTTTTTGGTGTGACAATAAATGAGCTGCAAGCTGAGTCAGGGATTGTAATAAGAGCTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACACGATGCAAATGGTGGCTATGGTTTGGCATTACAGGAAGACAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACCGTCAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGTCTTTCTTTAAAAAGTTGGAAGGTCTTCAACCTTGTGAAGTCTCCGAACTGAAGCCTGGCACTCATATCTTTGCTGTTTATGGGGATAACTTCTTTAAGACTGCTAGTTATACAATTGAGGCAGTATGTGCAAAATCACATGAAGATACCACCAAAAAGCTTATGGACATTGAGGCTCAAATTTTACGAAAGAGGAATGAGCTACGCCAATTTGAAGCAGAATATAGAAAGGCATTGGCACGTTATCAAGAAGTGACAGACAGATACACAAAAGAAAAACAGTCTGTAGATGAGCTTCTGAAACAAAGGGACAGTATTCATTCTTCCTTCACCATTGTCAAGTCAACTAGTATTATTGGGAGTGCTAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGAGAGCCCTGAGGATGGAGGGTCAGATGAAAAGGATAAATCAGGCAAAAAGAAATGGTTTAACCTCAATCTTAAGGGTTCTGATAAGAAGTTGATTTAA 1230 0.4065 MGMGSKIEGPSTPTNRRDPYEVLSVTRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYTILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVTGKVEKQCAHFFGVTINELQAESGIVIRATSTAQSKFKLLYFEHDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGSFFKKLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTKKLMDIEAQILRKRNELRQFEAEYRKALARYQEVTDRYTKEKQSVDELLKQRDSIHSSFTIVKSTSIIGSASNLSNGSSSKISGEESPEDGGSDEKDKSGKKKWFNLNLKGSDKKLI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0441 409 Pfam DnaJ domain 18 80 IPR001623 -
Lal13g0441 409 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Lal13g0441 409 MobiDBLite consensus disorder prediction 366 392 - -
Lal13g0441 409 CDD DnaJ 18 72 IPR001623 -
Lal13g0441 409 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 4 407 - -
Lal13g0441 409 PRINTS DnaJ domain signature 20 38 IPR001623 -
Lal13g0441 409 PRINTS DnaJ domain signature 38 53 IPR001623 -
Lal13g0441 409 PRINTS DnaJ domain signature 55 75 IPR001623 -
Lal13g0441 409 PRINTS DnaJ domain signature 75 94 IPR001623 -
Lal13g0441 409 Coils Coil 288 343 - -
Lal13g0441 409 MobiDBLite consensus disorder prediction 1 21 - -
Lal13g0441 409 Gene3D DnaJ domain 4 100 IPR036869 -
Lal13g0441 409 SUPERFAMILY Chaperone J-domain 14 88 IPR036869 -
Lal13g0441 409 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 407 - -
Lal13g0441 409 SMART dnaj_3 17 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0441 Lal-Chr13 2788306 2794532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0441 11 90 C2H2 Transcription Factor Family AT1G74250 41.176 7.06e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0441 - - lang:109336585 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0448 12 3154364 3161015 Lal13g0441 13 2788306 2794532 LSH
Lal13g0441 13 2788306 2794532 Lal24g0356 24 2522666 2528353 LSH