Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0434 ATGGGAACCATCCCAATGGATTCAAAAACATCAAGCTTTCTTTTGAACCCTTCAACTTTTCACTCAGTTTTGTACCAAGACAAACATGATGATGGCATAATTGATCTTGGTCTTAGTCTCAGAACTGTTCAACATGAAGCTTACCATTCTTCTGGCAACTTGTATCACCTTATGGATTGGCCTCAATCCAATCTCAACCTCAAGAACTCAAGCACAATGCATTCTAGACCTGTCCAAGAAACAAATGATGAAGAGATAGATGGTGTTCAAAGCAATGAGAGATGGGCTTATGTGAAGGTTAACATGGATGGAATTACCATTGGTAGGAAAATTTGTGTACTTGATCATGGAGGATACACAAGTTTAGCTTTCCAATTAGAAGATATGTTTGGAAGCCAAACTCTTTCTGGGTTGGGATTGTTCCAATCAGACTCAGAGTTCTCATTGTTCTACAAGGACAGAGAAGATAATTGGAGGACTGTTGGTGATGTTCCATGGAAGGAGTTTATAGAATGTGTGAAAAGGTTAAGGATTGCAAGAAAGAATGCAGGCTTTGTTCCATGTTCATCTAGATACACCTAA 582 0.3883 MGTIPMDSKTSSFLLNPSTFHSVLYQDKHDDGIIDLGLSLRTVQHEAYHSSGNLYHLMDWPQSNLNLKNSSTMHSRPVQETNDEEIDGVQSNERWAYVKVNMDGITIGRKICVLDHGGYTSLAFQLEDMFGSQTLSGLGLFQSDSEFSLFYKDREDNWRTVGDVPWKEFIECVKRLRIARKNAGFVPCSSRYT 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0434 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 6 183 - -
Lal13g0434 193 Pfam AUX/IAA family 60 181 IPR033389 -
Lal13g0434 193 Gene3D - 89 187 - -
Lal13g0434 193 ProSiteProfiles PB1 domain profile. 95 183 IPR000270 GO:0005515
Lal13g0434 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 183 IPR003311 GO:0005634|GO:0006355
Lal13g0434 193 SUPERFAMILY CAD & PB1 domains 95 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0434 Lal-Chr13 2753438 2755915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0434 85 181 B3 DNA Binding Superfamily AT1G34310 30.928 1.24e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal13g0434 AUX_IAA 1.3e-22 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0434 K14484 - gmx:100777024 320.087