Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0432 ATGCATAACAATAATGCTTGTTCTCCTTCCTCCAACCGCGGATACGGCGCCAACACCGTCGACTCTGATCAAATGCAGTCAAACAGCGCCGCCGCCTTTGCTTCCTTTTACTCTGCTTTGCTGAACGAAAACATTCCACCGTCGATCTCAGCAAGCTGTAGCAATCTCGGCGGCGGCGGTTACTCGTACTCTTCTGACTCGGGAACTCAGAGTCATGGCTACGACTCGTGCTTCATTCAGAAGCACCAAGACATGGTGAATCGTCACAGTATGTGCCTCACCCGCCTCGTGGAAACTTCGAAAGAGGTGGAAGCTCTGCGACAAGAGAATGCTCAGCTCCACGCTGTAAACAATGAGCTGCAGAAGAATCTGAACCTTGTAATTCAGGCCTCGCTGGATAATCAATTCAGTGGTGAAACGCAAACGACAGCGTTTGATATTGTTAATGGGTTCCGTGGGTTCCACGTTGGGGATGGGAAAGAGAACTGTGCTAATTGGAATATGAATATAAATAATAATAATAATAATAATAACTGTAAGAATGAGAAGGTGGAGGTTTCAGAGGAGAGTCCAACAAGTGTGATTGAGAATAACGGTGTTGAGGTGGAGAGGTTCGCATTGCCGAAAAGCATTTCTGTGAGGTCGAATGGTTACTTGAAGAATCAATCTGCTGCGGCCCTTCCAACCAATACTGTTGCCACTCGCATCAAGGGCGCTACTCGCCCACGCGCCTCCTCCACTCCTCCTCCTGATGCTGTTCAAAAGGTGTATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCCCTTGAGATGGTGGTATACAACCAGGGGATGTTCAAGACTGAGTTGTGTAACAAATGGCAGGAAACAGGGACATGTCCATATGGAGACCACTGCCAATTTGCTCACGGCATTGGGGAGCTTCGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTATGTAGGATGGTCCTTGCTGGGGTTGTATGCCCATATGGCCATAGATGCCATTTCCGTCATGCACTCACTGAACAAGAGAAAGCTCTATCATCCCACCCTAAGCCCAGAGCAATGATGAAGCACCTGGATAGATAA 1095 0.4895 MHNNNACSPSSNRGYGANTVDSDQMQSNSAAAFASFYSALLNENIPPSISASCSNLGGGGYSYSSDSGTQSHGYDSCFIQKHQDMVNRHSMCLTRLVETSKEVEALRQENAQLHAVNNELQKNLNLVIQASLDNQFSGETQTTAFDIVNGFRGFHVGDGKENCANWNMNINNNNNNNNCKNEKVEVSEESPTSVIENNGVEVERFALPKSISVRSNGYLKNQSAAALPTNTVATRIKGATRPRASSTPPPDAVQKVYVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKALSSHPKPRAMMKHLDR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0432 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 51 351 - -
Lal13g0432 364 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Lal13g0432 364 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Lal13g0432 364 Coils Coil 96 123 - -
Lal13g0432 364 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Lal13g0432 364 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Lal13g0432 364 SUPERFAMILY CCCH zinc finger 311 345 IPR036855 GO:0046872
Lal13g0432 364 SUPERFAMILY CCCH zinc finger 274 309 IPR036855 GO:0046872
Lal13g0432 364 Gene3D - 272 310 - -
Lal13g0432 364 Gene3D - 311 347 - -
Lal13g0432 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Lal13g0432 364 MobiDBLite consensus disorder prediction 1 22 - -
Lal13g0432 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 51 351 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0432 Lal-Chr13 2729233 2738526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0432 78 360 C3H Transcription Factor Family AT1G68200 49.485 8.54e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal13g0432 zf-CCCH 3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0432 K18753 - gmx:100819250 461.07