Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0421 ATGGGGGATCACTTTGTGTTGCTGGTTGATCGGTTGCTGACTGAATCCACGTTAGAAGCTACACTTGAAAGCAGAAATTGTGCAATGCAGGCTGCATCTTCAGCATTGGATGATACAAAAGTTGATGTCTCCTTGATGAAGAAGGGGCTAGATGGTACAAAATCTCCAGGAAAATTGGTTGAATGCAAGATTTGTCATGATGAGGATGAAGATTGTAATATGGAGACACCTTGTTCCTGTTGCGGAAGTTTGAAGTATGCTCACCGTAGATGTGTCCAACGGTGGTGTAATGAGAAGGGTGATACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTACACAGCTCCTCCTCCACTATTTCGATTTGGGCATATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGACTTGAACAGAGCGCATTTGGTTAGCATGGTTCCCACCGACCAGAACCTTATCAACTCTGACTATGACCGGTATTCAGCCTCTTCTACAAGAAGTTTGATATGCTGTCGTTCAGTTGCTGTCATTTTCATGGCTCTACTAATTTTAAGGCATACACTTCCCCTCACAATTAGTGGTAATATGGAGTATTCTTTCCCACTATTTATGCTGTTATTATTTCGGATTGTGGGAATTGTTTTTCCAATATACCTCATGGTAAGAGCAGTCTTGTTAATCCAGCGGCATCGGCAGCAACATCAAGAGCATCCTGATTCCTTGGTTAGTGTATCTGATGACGAAAACGAAGAAGTGGATTTGCAGCCTCAGCCTCATATCATACGTGTACTGTAA 810 0.4284 MGDHFVLLVDRLLTESTLEATLESRNCAMQAASSALDDTKVDVSLMKKGLDGTKSPGKLVECKICHDEDEDCNMETPCSCCGSLKYAHRRCVQRWCNEKGDTTCEICHQQFKPGYTAPPPLFRFGHIPMSFRGNWEISRRDLNRAHLVSMVPTDQNLINSDYDRYSASSTRSLICCRSVAVIFMALLILRHTLPLTISGNMEYSFPLFMLLLFRIVGIVFPIYLMVRAVLLIQRHRQQHQEHPDSLVSVSDDENEEVDLQPQPHIIRVL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0421 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 117 IPR013083 -
Lal13g0421 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Lal13g0421 269 MobiDBLite consensus disorder prediction 242 262 - -
Lal13g0421 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Lal13g0421 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Lal13g0421 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 266 IPR033275 -
Lal13g0421 269 PANTHER OS01G0121200 PROTEIN 1 266 - -
Lal13g0421 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Lal13g0421 269 SUPERFAMILY RING/U-box 60 112 - -
Lal13g0421 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0421 Lal-Chr13 2641269 2645237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0421 51 108 C3H Transcription Factor Family AT2G37950 42.623 4.59e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0421 - - vun:114190540 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0421 13 2641269 2645237 Lal24g0334 24 2362895 2372304 LSH