Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0405 ATGGCAATCCAGCATCATCAAATGAATGACCAGTTTGAACAACAACAACAACAACACAATGAAAATGTCTCCTCTGTCCTTGATGCTCTTTACTGTGATGAAGCAAAATGGGAAGATGAAGAAGGAGAGTTATCTTCTGAAAACAGTGATGTGACAACAACAACAAACAATAATAATGCTTCTCTTCTTTTCCCTCTGTTCATGTTAGAACAAGATTTGTTGTGGGAAGATGAAGAGCTAGTCTCTCTCTTCTCCAAAGAAAAGAATGAACAAGAGACTTTTCACTTAAAGAATCATAATAATAATGATGTTAATATGAGTTTAGATGACTCTGCTCTCTGTGTGGCACGTCGTGAAGTAGTTGAATGGATGCTTAAAGTGAATGGTCATTATGGTTTCTCAGTCCTCACTGCAACATTGGCTGTTACTTATTTTGATAGATTCATTTCAACCTTCTATTTTCAAAGGGAGAAGCAGCCTTGGATGATCCAACTTGTAGCTGTTACTTGCATCTCTTTAGCTGCTAAAGTTGAAGAAACTCAAGTCCCTCTTCTCTTAGACCTTCAAGTGGAAGACACCAAATATGTGTTTGAGGCAAAGACCATTCAGAGAATGGAGCTGCTTGTGTTATCCACTCTTAAGTGGAAGATGCACCCAGTTACACCACTCTCATTTCTAGATCACATTATAAGGAGGCTGGGATTGAAAACCAATCTTCACTGGGAATTCTTAAAGCGTTGTGAGAATCTTCTTCTATCTGTCCTCTTAGATTCGAGATTTGTTGGTTGTCTTCCTTCTGTTTTGGCCACTGCCACAATGCTGCATGTTATAGACCAGATTGAGCATAAGGATGGTGTAGAATACGAAAATCAGCTTCTCAGTGTTCTCAAAATTAGCAAGGAGAAAGTGGATGAGTGTTACAATGCCATTCTCCATCTTAATCTTAAGGACTCAAATGCCAATAATTATGCTCATAACCCTCTCAAGCGCAAGTATGACCAAATCCCTGGTAGCCCAAGTGGCGTAATTGATGCTGCTTTTAGCTCTGATGGTTCTAACGATTCTTGGGCAGTGGGGTCATCATTATACTCATTACCAGAGACAGAACTTGTGTTAAAGAAAAGCAGAACCCAAAGCCAAGGACAACAAATGAAATTGTCACCACTTAACAACCGGGTCGTTGTCGGAATTATTGGCACCTCTCCTTAA 1209 0.3962 MAIQHHQMNDQFEQQQQQHNENVSSVLDALYCDEAKWEDEEGELSSENSDVTTTTNNNNASLLFPLFMLEQDLLWEDEELVSLFSKEKNEQETFHLKNHNNNDVNMSLDDSALCVARREVVEWMLKVNGHYGFSVLTATLAVTYFDRFISTFYFQREKQPWMIQLVAVTCISLAAKVEETQVPLLLDLQVEDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTNLHWEFLKRCENLLLSVLLDSRFVGCLPSVLATATMLHVIDQIEHKDGVEYENQLLSVLKISKEKVDECYNAILHLNLKDSNANNYAHNPLKRKYDQIPGSPSGVIDAAFSSDGSNDSWAVGSSLYSLPETELVLKKSRTQSQGQQMKLSPLNNRVVVGIIGTSP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0405 402 PANTHER CYCLINS 41 353 IPR039361 -
Lal13g0405 402 ProSitePatterns Cyclins signature. 117 148 IPR006671 -
Lal13g0405 402 MobiDBLite consensus disorder prediction 1 20 - -
Lal13g0405 402 Pfam Cyclin, C-terminal domain 220 334 IPR004367 -
Lal13g0405 402 SUPERFAMILY Cyclin-like 91 218 IPR036915 -
Lal13g0405 402 SMART cyclin_7 122 211 IPR013763 -
Lal13g0405 402 SUPERFAMILY Cyclin-like 221 333 IPR036915 -
Lal13g0405 402 SMART Cyclin_C_2 220 351 IPR004367 -
Lal13g0405 402 Gene3D - 115 218 - -
Lal13g0405 402 CDD CYCLIN 117 210 IPR013763 -
Lal13g0405 402 Pfam Cyclin, N-terminal domain 100 217 IPR006671 -
Lal13g0405 402 Gene3D - 219 310 - -
Lal13g0405 402 PANTHER CYCLIN-D3-1 41 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0405 Lal-Chr13 2535872 2538092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0405 1 331 Core Cell Cycle Gene Families AT4G34160 53.474 7.29e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0405 K14505 - gmx:547740 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0405 13 2535872 2538092 Lal13g0405 13 2535872 2538092 ECH
Lal4g0132 4 824655 826647 Lal13g0405 13 2535872 2538092 ECH
Lal21g0217 21 1428124 1430020 Lal13g0405 13 2535872 2538092 ECH
Lal12g0409 12 2906137 2908184 Lal13g0405 13 2535872 2538092 LSH
Lal13g0405 13 2535872 2538092 Lal24g0325 24 2308314 2310804 LSH
Lal16g0233 16 1397711 1399795 Lal13g0405 13 2535872 2538092 PCT
Lal15g1257 15 14175067 14177312 Lal13g0405 13 2535872 2538092 PCT
Lal23g0189 23 1672243 1674788 Lal13g0405 13 2535872 2538092 PCT