Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0395 ATGTCAAACCCTATGTCAAACAACCCTAACCAAAAGAGGAGTAAGGGTCGCCGAAAGGTTGAAATGAAAAAGATGAGCAATGGGAGCAACCTTCAAGTAACCTTCTCCAAACGCCGCAGTGGACTTTTCAAAAAAGCTAGCGAACTTTGCACTCTTTGCGGTGCAGAAGTTGCACTCATTGTTTTTTCCCCTGCGGATAAGGCTTTCTCTTTTGGCCATCCTAGTGTTGGGGAGATCATAGACAAGTATAAGATGAGGTGTCCCCCATACAATCAAGATTTAGGAACCATACAGTTTATAGAGGCTCATCGCAATTCCAATGTGCGTGAACTAAATGCTTTGTTAACAAATATTAATGCAGATTTGGAGACTGAGAAAAAGTGCAGTGATGAACTGAACCAGCAATGTAAGGTGGTTCAGGAGCAGTGTTGGTGGGCTACTCCGATTCAGGAGATGAACAATCCTGAGCAACTTGATCAGCTCAAGTTGGCTCTGGAGAATTTGAAGAAGAACGTTCTTAACCATGTGGAAAAACAGCTTTCAATTCAAGGTGCTGCTGCTAATAACACACCACCTCAATTTTTTGCAGGTGGTTCGTCCTCTTCTTCAAACAACAATTTGCAGCTATCTCAGTTGTTTCCAGCTCCTCCACCATCCCAGGTGTTTCCGGTTCGTCAACCTCATCAGATGCTTCATAATCAGCCTATGATGATGCCTAATCATCTTTTTGATGGAGCTGGAATGATGCATCACTCTACCTTCAGTAACAATAACATTGATAGATTTGGACCACCCAGTAGATTATTTTGA 810 0.4259 MSNPMSNNPNQKRSKGRRKVEMKKMSNGSNLQVTFSKRRSGLFKKASELCTLCGAEVALIVFSPADKAFSFGHPSVGEIIDKYKMRCPPYNQDLGTIQFIEAHRNSNVRELNALLTNINADLETEKKCSDELNQQCKVVQEQCWWATPIQEMNNPEQLDQLKLALENLKKNVLNHVEKQLSIQGAAANNTPPQFFAGGSSSSSNNNLQLSQLFPAPPPSQVFPVRQPHQMLHNQPMMMPNHLFDGAGMMHHSTFSNNNIDRFGPPSRLF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0395 269 CDD MADS_MEF2_like 16 84 IPR033896 GO:0000977|GO:0045944
Lal13g0395 269 PANTHER MADS BOX PROTEIN 14 220 - -
Lal13g0395 269 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 14 220 - -
Lal13g0395 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Lal13g0395 269 Coils Coil 158 178 - -
Lal13g0395 269 Gene3D - 27 92 IPR036879 GO:0003677|GO:0046983
Lal13g0395 269 Gene3D - 95 192 - -
Lal13g0395 269 SUPERFAMILY SRF-like 16 87 IPR036879 GO:0003677|GO:0046983
Lal13g0395 269 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Lal13g0395 269 MobiDBLite consensus disorder prediction 1 28 - -
Lal13g0395 269 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lal13g0395 269 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lal13g0395 269 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lal13g0395 269 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0395 Lal-Chr13 2477405 2478214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0395 12 241 Type I MADS-box Gene Family AT5G60440 45.798 2.26e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g0395 SRF-TF 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0395 - - lang:109356189 266.159