Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0390 ATGACTAGTCCAACTGGAAATTTGACAAACAATAACGACGATACTGGTGATCAGATACACATCCTTGATTCTGGAATGGAACAATCTGGGTTGTCTGAAAAAGCACCTCAGATGGGCTCTAAGTGTTCAGATAGTGAAAAAAAGGTGCTTGATGGCGCGCTAAACAATTCTCTCGATGATGAAAAATCAAATCAAGTTTCTGACATTTTGGATGAGAATCCTGTAATTCAACCGCTTGCTCCCCCACAGCATGACTTAGAAAAAAATTGTCAGACAGGAGAAGGTTTGTGCCTTCAACAAAGTATCTCTGAACAAGAGCCTGTTCTTTTATCAAATGATAAATCAGAAAACAAATGTCAGCCATTCTCTCAAAATGTTCACGGTGAGCTGTTACAATCTATTTCTGCACAAGTCCCTATTCATTTATCAGATGATAATTCAGAGAGCAAAAGTCAGCCATTCTCCCAAGATGTTCATAATGAGTTTGAAGAAATGAACAACACAGCAACTGACTTTCTTGTTGAGGACCAACCACAATCTATTTCTGCACAAGTCCCTGTCCATTTATCAGATCATAAATCAAGGAACACAAGTCAGCCACTTCCCCAAATTGTTCAAAATGAATTTGAAGAAATGAGCAATGCAGTAACTGGCTCTCTTGTTGAGGACCAAACACTATATATTCCTGCACAAGTCCCTATTAATTTATCAAATGACGAATCAGAGAACAAATGCCAGTCATTCTCTCAAAATGTTCAAAATGAACTGGAAGAAAAAAGTGATGCAGTAACTGCCATTCTTGTTGAAGACCAAACTCAGTGCATTATTGGAAAAGTCCCTGTTCATCTACCAAGTGATAGATCAGAGAACAAATCTCAGTTATCCTCTCAAAATGTTGAAAATGAACTGGTAGATAAAAGTGATGCAGGGACTGGTATTCTTGTTGACGACCAAACTCAAACACAAGCGAACTTGAGTCATGTGGATCCACCTTCTGGAGATTTTGCAAAAAATAATAGTTCTGATTGTCTGGAAAGAAAGTCTAAAAGTGCAACTCCTGCGCGGTTAAGGCACAAGGGTAAAGGAAACTCAAAATTTTTGAAGAAGTATATGCTTAGGTCAATAGGAAGCAGTGACAGATCTTTGCGGTCAAGGACAGTAGAAAAACCTAAAGCACCTGAATCAAGTGGTAATTTGGTTGATGTCAATAATGATGGTGTGAAGAGGAAAAAAAGGAAGAGGAAAGATAGAAAAGAGGTGGGAAAGATTGATGAGTTTTCTAGAATCAAAGCTCACTTAAGATATTTTTTGAACAGAGTAAGCTACGAGCAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGCATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAACGAGCAAAGTCTGCAATACTTCGACGTAAATCACAAATTAGGGATCTATTTCAAAAGTTGGATTCATTATGTGCTGAAGGAAGGCTTCCAGAATCTTTGTTTGATTCCGAGGGGGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCAGTCCAAAGAATTGAGCATGGATAATGACATAATTCTCTGTGATGGTGCATGTGACCGTGGATTTCACCAGCTTTGTCTGGATCCTCCATTGTTAACTGAAAACATTCCATCTGGTGACGAGGGTTGGCTATGCCCAGGGTGTAATTGCAAAGATGACTGCATCGACCTTGTTAACGACTCCTTAGGAACAAGACTCACTCTTAGTGATACCTGGGAGAGTGTTTTTCCTGAAGCAGCTGCTGGAAATAGCGAGGATCACAACTTGGGACTTCCTTCTGACGATTCTGGTGATGATTATAATCCTGATGTTCCACAAGATGAGGAGGTTGAAGGAGGTGAGCCAAGTTCTGATGAATCTCAATATGCTTCTGCTTCCGAGAAATTGGAGGACTCACACCATGAGGATCCATACTTGGGCCTTCCTTCTGAAGATTCAGAGGATGATGATTATAATCCTAATGCTCCAGATCGTGACAATAAAGTCACAGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTATTATAAATAAAGATAACAAGTCCCCTGGACAGGGTGAAGATATTACATCTGCATCGTTGGATGATTTTAAGACCTCTAAAGGTTCTAGCAAGCAAAAATGTGAAGTTGGTAAGAAGCCATCTTTAACTGATGAACTATCATCTTTAAAAGAGTCAGATCCTGACCAAGTGGGCTGTGCTCATGTTTCTGGAAAACGAAATGTGGAAAGGCTGGACTACAAAAGGCTGTATGATGAGACATACAAAAGTGATACCAGTGATGATGATGAGGATTGGACTGCTACTACTAGTAGAAAAAAGAATGTCAGTGGCGAACTGACATCAGTGTCACCCGATGGGAAAGTCTCAAATAATTCCAGATCTAATCCTAGGAGGAATGCTCATCAGAATAGAGTTGACAATACAAATAATTCTCCAGCTAAATCACCTGAAGGCTCTGGAAAATTTAGTTCCAGGAATAAAAAGCCTGGATTTTCAGCATCCAAAAAAAGACTTGGAGAAGCTGTAGTTCAGAAGATCCTTTCAACTAAGTTTACAAGACTTTACAAATCGTTTAAAGAAAATCAGTATCCGGACCGAAACACAAAGGAAACCTTGGCGCAAGAACTCGGACTAACTGTTCGGCAGGTTGACAAATGGTTTGGCAATAGTCGTTGGAGTTTCCGGCATTCACCACACACAAAAACCAGCGCTGGTGGAAATGCTTCACTGCAGGCCACTGATACCATGGTTGAAAATAAAGGGGCACTTGGTGGTGAGGAGAAGGACTGTGAATTAGTGTCCCAGGAGAGCAATGGAGAAAAAACGAAGACCCCAAACACTAGAAAAAGGAAGCATATGTCCTAA 2943 0.4023 MTSPTGNLTNNNDDTGDQIHILDSGMEQSGLSEKAPQMGSKCSDSEKKVLDGALNNSLDDEKSNQVSDILDENPVIQPLAPPQHDLEKNCQTGEGLCLQQSISEQEPVLLSNDKSENKCQPFSQNVHGELLQSISAQVPIHLSDDNSESKSQPFSQDVHNEFEEMNNTATDFLVEDQPQSISAQVPVHLSDHKSRNTSQPLPQIVQNEFEEMSNAVTGSLVEDQTLYIPAQVPINLSNDESENKCQSFSQNVQNELEEKSDAVTAILVEDQTQCIIGKVPVHLPSDRSENKSQLSSQNVENELVDKSDAGTGILVDDQTQTQANLSHVDPPSGDFAKNNSSDCLERKSKSATPARLRHKGKGNSKFLKKYMLRSIGSSDRSLRSRTVEKPKAPESSGNLVDVNNDGVKRKKRKRKDRKEVGKIDEFSRIKAHLRYFLNRVSYEQSLIDAYSGEGWKGYSMEKLKPEKELQRAKSAILRRKSQIRDLFQKLDSLCAEGRLPESLFDSEGEIDSEDIFCAKCQSKELSMDNDIILCDGACDRGFHQLCLDPPLLTENIPSGDEGWLCPGCNCKDDCIDLVNDSLGTRLTLSDTWESVFPEAAAGNSEDHNLGLPSDDSGDDYNPDVPQDEEVEGGEPSSDESQYASASEKLEDSHHEDPYLGLPSEDSEDDDYNPNAPDRDNKVTEESSSSDFTSDSEDLAIINKDNKSPGQGEDITSASLDDFKTSKGSSKQKCEVGKKPSLTDELSSLKESDPDQVGCAHVSGKRNVERLDYKRLYDETYKSDTSDDDEDWTATTSRKKNVSGELTSVSPDGKVSNNSRSNPRRNAHQNRVDNTNNSPAKSPEGSGKFSSRNKKPGFSASKKRLGEAVVQKILSTKFTRLYKSFKENQYPDRNTKETLAQELGLTVRQVDKWFGNSRWSFRHSPHTKTSAGGNASLQATDTMVENKGALGGEEKDCELVSQESNGEKTKTPNTRKRKHMS 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0390 980 MobiDBLite consensus disorder prediction 947 962 - -
Lal13g0390 980 ProSiteProfiles Zinc finger PHD-type profile. 514 571 IPR019787 -
Lal13g0390 980 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 306 977 - -
Lal13g0390 980 Pfam PHD-finger 516 571 IPR019787 -
Lal13g0390 980 ProSiteProfiles 'Homeobox' domain profile. 880 923 IPR001356 GO:0003677
Lal13g0390 980 MobiDBLite consensus disorder prediction 324 339 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 1 18 - -
Lal13g0390 980 ProSitePatterns Zinc finger PHD-type signature. 517 568 IPR019786 -
Lal13g0390 980 SMART PHD_3 516 569 IPR001965 -
Lal13g0390 980 SMART HOX_1 870 927 IPR001356 GO:0003677
Lal13g0390 980 MobiDBLite consensus disorder prediction 725 750 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 644 661 - -
Lal13g0390 980 CDD homeodomain 871 923 IPR001356 GO:0003677
Lal13g0390 980 MobiDBLite consensus disorder prediction 920 980 - -
Lal13g0390 980 Coils Coil 238 258 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 764 795 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 600 865 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 57 71 - -
Lal13g0390 980 Gene3D - 872 932 - -
Lal13g0390 980 PANTHER HOMEOBOX PROTEIN HAT3.1 306 977 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 708 724 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 920 942 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 378 419 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 1 88 - -
Lal13g0390 980 CDD PHD_PRHA_like 516 568 IPR045876 -
Lal13g0390 980 MobiDBLite consensus disorder prediction 324 363 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 796 855 - -
Lal13g0390 980 MobiDBLite consensus disorder prediction 620 635 - -
Lal13g0390 980 SUPERFAMILY Homeodomain-like 878 925 IPR009057 -
Lal13g0390 980 Pfam Homeodomain 877 919 IPR001356 GO:0003677
Lal13g0390 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 578 IPR013083 -
Lal13g0390 980 SUPERFAMILY FYVE/PHD zinc finger 506 574 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0390 Lal-Chr13 2450148 2456487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0390 316 978 Homeobox Transcription Factor Family AT3G19510 42.351 6.51e-126 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lal13g0390 PHD 1.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0390 - - aprc:113871869 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0390 13 2450148 2456487 Lal13g0390 13 2450148 2456487 ECH