Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0385 ATGATGCGTTTGTGCTACAGTCCTCTCGATTGTTGTTTCCGACGCGGCGGCGGTGACGGACTTCTCTGGCACACGGAATTGAAGCCTCATGCCTCCGGCGACTTTTCGATTGCTGTTGCTCAAGCCAATTACAGTCTCGAAGATCAGAGTCAAGTCTTCACGTCCCCCTCCGCCACTTATATCGGTGTCTACGACGGTCACGGAGGACCTGAAGCTTCAAGATTCGTCAACAGACATCTCTTTTCTTATTTGCACAAATTTACCACTGAACAAGGGGGATTATCGGTGGATGTGATTAAAAAGGCGTTTAGCGCCACAGAGGAAGACTTCTGTCATTTGGTGAAGCTGTCAATCCACATTAGTCCCCAAATTTCTACGGTAGGATCATGTTGTCTTCTTGGTGCAATTTCAAATAATGTGTTGTATGTTGCCAACCTTGGAGACTCTAGAGTTGTTCTTGGCAGGAGGTATACTGAGAGCAAGAGTTCTCCAGTAGTGGCAGAGCGGTTGTCAACTGATCATAATGTAGCTGATGAAGAGGTGAGAAGAGAAGTTGAAGCCCTCCACCCTGATGATTCAGATATTGTAGTTTATACCCGTGGAGTTTGGAGGATTAAGGGTATTATACAGGTATCAAGATCTATTGGCGATGTGTATTTGAAGAGACCCGATTTTTATAGAGACCCAGTTTTTCAGCAATATGGAAATCGCATTCCTTTGAAGCGTCCTGTAGTGACAGCTGAACCATCAATCATTATCAGGAAGCTGGAGCCAGAAGATTTATTCTTGATATTTGCATCCGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCAGTTAATATTGTTTTCAAATATCCTAGAGCTGGAATTGCCAAGAGACTAGTTAGAACAGCCCTTCAGAAAGCTGCAAAGAAGAGAGAGATGAGATATGATGATATAAAGAAAATTGAAAAAGGAATAAGACGACATTTCCACGATGATATCACTGCTATTGTTATCTTTCTTGATCACCAAAAGGGATCCTCTCATGGTAGATTTAAGCAAGCTGCTGTTGGGTGCACAACTGCACCTGTTGATATTTTCTCCTTAAATGCGGAAGAAGCAGAAGCGGAGAAGAGTATGCTTAGTTCAGTTGGCTAA 1143 0.4322 MMRLCYSPLDCCFRRGGGDGLLWHTELKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYIGVYDGHGGPEASRFVNRHLFSYLHKFTTEQGGLSVDVIKKAFSATEEDFCHLVKLSIHISPQISTVGSCCLLGAISNNVLYVANLGDSRVVLGRRYTESKSSPVVAERLSTDHNVADEEVRREVEALHPDDSDIVVYTRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPVFQQYGNRIPLKRPVVTAEPSIIIRKLEPEDLFLIFASDGLWEQLSDEAAVNIVFKYPRAGIAKRLVRTALQKAAKKREMRYDDIKKIEKGIRRHFHDDITAIVIFLDHQKGSSHGRFKQAAVGCTTAPVDIFSLNAEEAEAEKSMLSSVG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0385 380 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
Lal13g0385 380 Gene3D - 25 345 IPR036457 -
Lal13g0385 380 SMART PP2C_4 28 334 IPR001932 -
Lal13g0385 380 CDD PP2Cc 47 336 IPR001932 -
Lal13g0385 380 ProSiteProfiles PPM-type phosphatase domain profile. 34 336 IPR001932 -
Lal13g0385 380 Pfam Protein phosphatase 2C 55 305 IPR001932 -
Lal13g0385 380 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 372 - -
Lal13g0385 380 PANTHER ALPHABET, ISOFORM E-RELATED 4 372 - -
Lal13g0385 380 SUPERFAMILY PP2C-like 43 338 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0385 Lal-Chr13 2414474 2418026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0385 16 343 PP2C-type Phosphatase Gene Family AT3G51370 56.548 2.69e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0385 - K01102 gmx:100812137 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0385 13 2414474 2418026 Lal13g0385 13 2414474 2418026 ECH
Lal12g0393 12 2785172 2788303 Lal13g0385 13 2414474 2418026 LSH
Lal13g0385 13 2414474 2418026 Lal24g0300 24 2152038 2157175 LSH
Lal16g0240 16 1437767 1440515 Lal13g0385 13 2414474 2418026 PCT