Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal13g0384 | ATGACGAGCGCTTCCGAGTTATTCAACAGAAGGCATCATCGACTTGGAGTTGGTCGATACTCTCTCGATCCAACCTTCGATTCTTCTCCCTCTCCAGATCTTCACCTTCGTCTCCACGACGCCGATTCTCTCCGCCGCCACGACCATGTTCGCCGTCTCCGCCACCGTTCCTCCCACACCGAGCGTGGAGCGGATAGGTTTGTTCATCGCAGGAATCGTTGGTCTGTCGTAAATGATAGCGACGATTCTGCAGAAAATGGGAGAGATATGAGAGTGAGTGGTAGTGACGTACTACCTGTTGAAGTGCTACTTGCAAGGGAAAGACTCCTTGAGAGGCTGAGAGGGGACAATTTCTCTACCAACAGGCAACATGGTAGAGACTCAACGGTTGGAGATCAAGCTAGCGAAATATCAAATGATGTTCCAACTGGGGGCTATCTAGTTAGTGACTTGACTTCCCAAATGGGAAGGTCGCAGCTCTTACAAGAACTAGACCAAAAGCCACCTGGACTCACTCAGGAGGCCATTGACTGTTTGCATCTGGAAGTTTTTATCAGCAGGCTGACAGCATCGGTGTCCAGAGTACTGCAGGATTGTAGCATATGCTTAGAATCTTTCACGGATGGAGATAAGCTGATATGTTTGCCATGTGGACATAAATTTCACTCTGCTTGTTTGAATCCTTGGGTTCGCAGTTGTGGAGACTGTCCCTACTGTAGAAGAGGTATAGTTGTAAATAGTCACTTACCAAAAAAGAGGCTGAATGGTTTCTACTATATAGGTTGA | 786 | 0.4758 | MTSASELFNRRHHRLGVGRYSLDPTFDSSPSPDLHLRLHDADSLRRHDHVRRLRHRSSHTERGADRFVHRRNRWSVVNDSDDSAENGRDMRVSGSDVLPVEVLLARERLLERLRGDNFSTNRQHGRDSTVGDQASEISNDVPTGGYLVSDLTSQMGRSQLLQELDQKPPGLTQEAIDCLHLEVFISRLTASVSRVLQDCSICLESFTDGDKLICLPCGHKFHSACLNPWVRSCGDCPYCRRGIVVNSHLPKKRLNGFYYIG | 261 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal13g0384 | 261 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 244 | IPR013083 | - | |
Lal13g0384 | 261 | CDD | RING-H2_PA-TM-RING | 198 | 240 | - | - | |
Lal13g0384 | 261 | SMART | ring_2 | 199 | 239 | IPR001841 | - | |
Lal13g0384 | 261 | SUPERFAMILY | RING/U-box | 198 | 246 | - | - | |
Lal13g0384 | 261 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED | 1 | 245 | - | - | |
Lal13g0384 | 261 | Pfam | Ring finger domain | 198 | 240 | IPR001841 | - | |
Lal13g0384 | 261 | PANTHER | SI:CH211-59O9.10 | 1 | 245 | - | - | |
Lal13g0384 | 261 | ProSiteProfiles | Zinc finger RING-type profile. | 199 | 240 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal13g0384 | Lal-Chr13 | 2410216 | 2412796 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal13g0384 | 66 | 244 | C3H Transcription Factor Family | AT1G49850 | 44.134 | 1.97e-39 | 135 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal13g0384 | - | - | lang:109335003 | 447.973 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal13g0384 | 13 | 2410216 | 2412796 | Lal13g0384 | 13 | 2410216 | 2412796 | ECH |