Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0384 ATGACGAGCGCTTCCGAGTTATTCAACAGAAGGCATCATCGACTTGGAGTTGGTCGATACTCTCTCGATCCAACCTTCGATTCTTCTCCCTCTCCAGATCTTCACCTTCGTCTCCACGACGCCGATTCTCTCCGCCGCCACGACCATGTTCGCCGTCTCCGCCACCGTTCCTCCCACACCGAGCGTGGAGCGGATAGGTTTGTTCATCGCAGGAATCGTTGGTCTGTCGTAAATGATAGCGACGATTCTGCAGAAAATGGGAGAGATATGAGAGTGAGTGGTAGTGACGTACTACCTGTTGAAGTGCTACTTGCAAGGGAAAGACTCCTTGAGAGGCTGAGAGGGGACAATTTCTCTACCAACAGGCAACATGGTAGAGACTCAACGGTTGGAGATCAAGCTAGCGAAATATCAAATGATGTTCCAACTGGGGGCTATCTAGTTAGTGACTTGACTTCCCAAATGGGAAGGTCGCAGCTCTTACAAGAACTAGACCAAAAGCCACCTGGACTCACTCAGGAGGCCATTGACTGTTTGCATCTGGAAGTTTTTATCAGCAGGCTGACAGCATCGGTGTCCAGAGTACTGCAGGATTGTAGCATATGCTTAGAATCTTTCACGGATGGAGATAAGCTGATATGTTTGCCATGTGGACATAAATTTCACTCTGCTTGTTTGAATCCTTGGGTTCGCAGTTGTGGAGACTGTCCCTACTGTAGAAGAGGTATAGTTGTAAATAGTCACTTACCAAAAAAGAGGCTGAATGGTTTCTACTATATAGGTTGA 786 0.4758 MTSASELFNRRHHRLGVGRYSLDPTFDSSPSPDLHLRLHDADSLRRHDHVRRLRHRSSHTERGADRFVHRRNRWSVVNDSDDSAENGRDMRVSGSDVLPVEVLLARERLLERLRGDNFSTNRQHGRDSTVGDQASEISNDVPTGGYLVSDLTSQMGRSQLLQELDQKPPGLTQEAIDCLHLEVFISRLTASVSRVLQDCSICLESFTDGDKLICLPCGHKFHSACLNPWVRSCGDCPYCRRGIVVNSHLPKKRLNGFYYIG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0384 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 244 IPR013083 -
Lal13g0384 261 CDD RING-H2_PA-TM-RING 198 240 - -
Lal13g0384 261 SMART ring_2 199 239 IPR001841 -
Lal13g0384 261 SUPERFAMILY RING/U-box 198 246 - -
Lal13g0384 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 245 - -
Lal13g0384 261 Pfam Ring finger domain 198 240 IPR001841 -
Lal13g0384 261 PANTHER SI:CH211-59O9.10 1 245 - -
Lal13g0384 261 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0384 Lal-Chr13 2410216 2412796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0384 66 244 C3H Transcription Factor Family AT1G49850 44.134 1.97e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0384 - - lang:109335003 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0384 13 2410216 2412796 Lal13g0384 13 2410216 2412796 ECH