Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0372 ATGGAATCTACTCAGCTTATTTCTGAAGAGTGGTGTTCTCTTAGTGGACTAAACACAGCTGAAGAAGCTGACTTCATGACTCAGTTGCTTGGTGGAAATTCCACCCTTTGGCCAAGCCATGAATCCACAGACACCAATAATACCAATTCATTTTTGCCTTCAAATGTTGCAAATACTAACTTATATTTTTCCCATGGGAGCACCTCTAGTGCTGATAGTGGTAACATATTTTCCACTTCAAGCACTATAACATACTCCCTTGAACCAGCAACTAATTTTGACTCCATGCCCATGGATTTTTGCTTAGGAGATTCCAAATTTAGTCCACATATTCTAAAACGGAATGATAACTTAAGCCAACAGATAAATGTACCAAGCAGTGGTGAAGAGCCAGGCCTAGACCAAGGGGGACAGGTTCTTAATTACTACAATTTGCATGCTGAAGAGGATAAAAACAGAAACTTGGTGAACACAGCAAAAAGATCAAGAAGGTCAATAGATGAGGTATCAGAGAACATGAGGAATGCTAAAACAAGGAAGATTCCAAAATCTGCTTCTATGAGCAACTTCAATGAAGAGGATAGAAGTGTTGGACTCCAAAGACAAGGCTCTAGCAGTTGCATTTCAGAAGGTGACTCTAATCCTTCTATGGAGCTAAATGGAGAGACATCTCCAAGTTTGAGCCCAAAAGATCCTACACTTCCCAATTTTAATAGAAAATCAAGATCTTCCACCTCTCCTCCCACTGATCCACAGACCCTTTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGATTGAGAATACTGCAAAGCCTTGTCCCAAATGGAACTAAGGTGGATATTAGCACCATGCTTGAAGAAGCTGTCCAATATGTGAAGTTTTTACAGCACCAAATTAAGCTTCTGAGCTCTGACGAATTGTGGATGTATGCACCCATTGCTTACAATGGAATCAACATTGGACTAGACCTCATTACAACCAAAGAACAATAG 996 0.3976 MESTQLISEEWCSLSGLNTAEEADFMTQLLGGNSTLWPSHESTDTNNTNSFLPSNVANTNLYFSHGSTSSADSGNIFSTSSTITYSLEPATNFDSMPMDFCLGDSKFSPHILKRNDNLSQQINVPSSGEEPGLDQGGQVLNYYNLHAEEDKNRNLVNTAKRSRRSIDEVSENMRNAKTRKIPKSASMSNFNEEDRSVGLQRQGSSSCISEGDSNPSMELNGETSPSLSPKDPTLPNFNRKSRSSTSPPTDPQTLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQHQIKLLSSDELWMYAPIAYNGINIGLDLITTKEQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0372 331 MobiDBLite consensus disorder prediction 153 178 - -
Lal13g0372 331 CDD bHLH_AtIND_like 248 310 - -
Lal13g0372 331 Gene3D - 252 305 IPR036638 GO:0046983
Lal13g0372 331 MobiDBLite consensus disorder prediction 179 252 - -
Lal13g0372 331 MobiDBLite consensus disorder prediction 153 256 - -
Lal13g0372 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Lal13g0372 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 313 IPR036638 GO:0046983
Lal13g0372 331 SMART finulus 253 302 IPR011598 GO:0046983
Lal13g0372 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 140 328 - -
Lal13g0372 331 Pfam Helix-loop-helix DNA-binding domain 257 297 IPR011598 GO:0046983
Lal13g0372 331 Coils Coil 159 179 - -
Lal13g0372 331 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 140 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0372 Lal-Chr13 2329717 2331379 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0372 153 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 51.613 5.47e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0372 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0372 - - gmx:100816788 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0383 12 2712335 2713704 Lal13g0372 13 2329717 2331379 LSH
Lal13g0372 13 2329717 2331379 Lal24g0293 24 2108383 2110168 LSH