Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0371 ATGGAGCCTGCTGAAGAATGGAGTTCCCTTAGTGGGTTATACACAGCTGATGAAGCTGACTTTATGAGCCAGTTGCTTGGTAATTGTTCAATCCCAGAGCAGTTCTGTGGAAATTTCAATTTGGAAATTCCATCTGTGTCATGGCATGGCCATGAATCAACAATAGTGAGCGTGACAAGCAATAACTATAGAAGTTCATATTATCCTGAAAATGCTGCTAATACTAATTTTTTGCATAGTAGTAATATATTTCCTAGTACAAGTGGTGGCAATTGCTACTTGAATGATCCAATAACCAAAAATGGCTATGTTCCTATTGGTTTTTCCTTGGTGGATGCCAAATTCAGCCCTTATGGTTTTCAAGGGAATGAGAACCAATATATAAATGAAAATATTGAAGAATTAGGTGTAGAAGTTGTTGCTGACAAGAATTTGCAGACTCACAAGGAATGTGCAGAAGTACTGGTTTCTGAGCCACCAGAAGAGTTTATAACCTGTAACCTTGAGAATTCAGGAAAAAGATCTAAGAGATCAGTGGAGGCCCAAAAGAACAAGAGAGATGTTAAACCAAGGAAGAAGCAAAAATCTGCTTCAATAAGCAACACTGAAGAGGATAGTATTCAGGGGCTGAACTTGAGTAATTGCTGCTCAGAAGATGAATCCAATGCTTCTCAAGAGATAAATGGAGAAGGGTCTTCATGCTTGAGCTTGAGCCCAAAAGATCTAAAGTCAAATGGTAAATCAAGGTGTAGTAGGGGTTCTGCTACTGATCCACAGAGCATCTATGCAAGAAGAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAACTCTAGTTCCCAATGGAACAAAGGTGGATATCAGCACTATGCTTGAGGAAGCTGTGGAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTTAGCTCTAATGATCTATGGATGTACGCTCCAATTGCTTACAATGGAATGAACATTGGATTAGACCTCAATCTTACCCCGACCAAACAACCATAG 1023 0.3881 MEPAEEWSSLSGLYTADEADFMSQLLGNCSIPEQFCGNFNLEIPSVSWHGHESTIVSVTSNNYRSSYYPENAANTNFLHSSNIFPSTSGGNCYLNDPITKNGYVPIGFSLVDAKFSPYGFQGNENQYINENIEELGVEVVADKNLQTHKECAEVLVSEPPEEFITCNLENSGKRSKRSVEAQKNKRDVKPRKKQKSASISNTEEDSIQGLNLSNCCSEDESNASQEINGEGSSCLSLSPKDLKSNGKSRCSRGSATDPQSIYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSNDLWMYAPIAYNGMNIGLDLNLTPTKQP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0371 340 PANTHER TRANSCRIPTION FACTOR BHLH54 4 336 - -
Lal13g0371 340 SMART finulus 260 309 IPR011598 GO:0046983
Lal13g0371 340 MobiDBLite consensus disorder prediction 174 205 - -
Lal13g0371 340 CDD bHLH_AtIND_like 255 317 - -
Lal13g0371 340 Pfam Helix-loop-helix DNA-binding domain 264 304 IPR011598 GO:0046983
Lal13g0371 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 336 - -
Lal13g0371 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 319 IPR036638 GO:0046983
Lal13g0371 340 MobiDBLite consensus disorder prediction 174 199 - -
Lal13g0371 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 303 IPR011598 GO:0046983
Lal13g0371 340 Gene3D - 257 318 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0371 Lal-Chr13 2324727 2326241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0371 1 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.182 1.30e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0371 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0371 - - gmx:100817334 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0371 13 2324727 2326241 Lal13g0371 13 2324727 2326241 ECH
Lal12g0382 12 2708326 2709974 Lal13g0371 13 2324727 2326241 LSH
Lal13g0371 13 2324727 2326241 Lal24g0292 24 2104263 2106222 LSH