Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0368 ATGGCCAGTTTTGGATCAACCACACAAAAGTGCATGGCATGTGACAAAACTGTGTACCTTGTTGATAAGCTAACCGCAGATGGTCGTATCTATCATAAGGCTTGCTTCCGATGCCACCATTGCCGCAATACCCTTAAGCTGAGCAACTATTGTTCTTTTGAGGGCGTGCTCTATTGCAGACCTCACTATGATCAACTATACAAGCGAACTGGTAGCCTTGACAAAAGTTTTGAAGGAACACCCAAAATTCTGAAACCAGAAAGGCAGCTCAGTGGTAATGAGAATAATAAAGTAATGGCAAACGTGTTCTTGGGCACCAAAGACAAATGTTCGAGTTGCAAAAAGACTGTCTATCCTACTGAGAGGGTTACAGTTAATGGGACTCCCTACCACAAGGGCTGCTTCAAATGTACCTATGGAGGTTGTACTATAAACTCAGCAAACTTCGTTACACATGAGGGGAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAAGGGAATTACAGTCAGCTTGAGAATGAACAGGAGAAAAATTCTGACTGA 555 0.4252 MASFGSTTQKCMACDKTVYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKILKPERQLSGNENNKVMANVFLGTKDKCSSCKKTVYPTERVTVNGTPYHKGCFKCTYGGCTINSANFVTHEGKLYCKHHHIQLFKEKGNYSQLENEQEKNSD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0368 184 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 183 - -
Lal13g0368 184 CDD LIM1_SF3 7 69 - -
Lal13g0368 184 SMART lim_4 10 62 IPR001781 -
Lal13g0368 184 SMART lim_4 109 161 IPR001781 -
Lal13g0368 184 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Lal13g0368 184 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Lal13g0368 184 Gene3D Cysteine Rich Protein 105 174 - -
Lal13g0368 184 Gene3D Cysteine Rich Protein 5 75 - -
Lal13g0368 184 Pfam LIM domain 110 165 IPR001781 -
Lal13g0368 184 Pfam LIM domain 11 65 IPR001781 -
Lal13g0368 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lal13g0368 184 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lal13g0368 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lal13g0368 184 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Lal13g0368 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Lal13g0368 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0368 Lal-Chr13 2312770 2315310 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal13g0368 LIM 4e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0368 K09377 - gmx:100306027 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0368 13 2312770 2315310 Lal13g0368 13 2312770 2315310 ECH
Lal12g0375 12 2667798 2680985 Lal13g0368 13 2312770 2315310 LSH
Lal13g0368 13 2312770 2315310 Lal24g0289 24 2077970 2090978 LSH