Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0348 ATGCAATTCTCAAAGTTGGATGATTCTCCTATGTTCCGTAAACAGATACTATGCCAGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTGAAGTTCTACAAGGGTTGTAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGAAGATATTGCATTTGCAAGTTCCCTGGAAATATTTGGTGGAGGGCATAATGACCCTCTCAGTGTGGCTTTTGGAGGTCCTGTTATGACCAAATTCACTATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGTTCCAAGGTGGAGCATATTTTAAATGACAGGTTGTTTAAGTTTGTCAATATTGATTTGCAAGAGGTTAAGGAATCGCGGAAAAGCTTTGACAAGGCTAGCATTATTTATGACCAGGCGCGTGAAAAGTTTTTGTCATTGAGAAAAGGCACGAAAAGTGATATTGTTACTGCCCTAGAAGAGGAACTTCATAACGCAAGATATGCATTTGACCAAGCTCGATTTAATCTTGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTAGAAGCAGTCAGTGGGACCATGGACGCTCATCTTCGCTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAACTATGAGCATGCAGCTCTCAATGAAAAAATGCTAGAGTACAAACGGAAGATTGATCGAGAGAGGTGGTTTTCAAATGGTTCTACGGGGCCTCCAAATGGTGATCGTATACAAGCCATTAGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGGTATCTCTCAAAGCGTTCCTCAAACCTAAGGGGGGACTGGAAAAGGAGGTTCTTTGTTCTTGATAGTCGAGGAATGTTGTATTACTATCGTAAACAGCACAACAAATCTTCTGGGCCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTCGGTTCTGGACTTCTAAGTCGATGGCTCTCTTCTCATTATCATGGCGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTAAACCTGCTCACATCAACAATCAAAGTTGATGCAGACCAATCAGATTTGAGGTTTTGCTTCAGAATCATTTCGCCTACAAAGAACTACACTTTGCAGGCAGAGAGTGCTCTGGACCAAATGGATTGGATTGAGAAGATAACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCAGAAAGGTATTTGCCGTCAAGTCCGATGGGAAGTGGTTATCATAGGTGTGCCAGTGAGAGTAGTTCTCTTGGAAGTTCAGATTTTGATCACTCTGCTGCTGAAGAATATGCAGCAGATAGAAGACTCGCTACTGTACATTTGGAGCGCCCTTCAAGAAGTTTGCAGCAGCAAAGATCCTGTATTAGAAGTGAGAAGACAATTGACATGTTGCGAAGAGTTTCCGGGAATGATAAATGTGCTGATTGTGGTGCCCCAGAACCTGATTGGGCATCATTAAATCTCGGTGTCCTTGTTTGCATAGAGTGTTCTGGTGTTCACCGAAACCTTGGTGTACACATATCAAAGGTCAGGTCTCTTACATTAGATGTTAAAGTTTGGGAGCCTTCTGTGATAAGCTTGTTTCAGTCTCTTGGGAATACTTTTGCCAATTCAATCTGGGAGGAACTACTGCAATCAAGAAGTGCCTTTCAGATTGATCTTGTCTCCACAGGAAAACCATGTCAATCTGATTCTCCATCCATGAAGGAAAAATTCATTCATGCAAAGTATGCAAAGAAGATTTTTGTTCGCAAGCCAAAGGACAATCAATGTCATCTCCAGGTGTCACAACATATCTGGGAGGCTGTTCATACTAATGACATAAAAGCTGTATACCGCTACATTGTTAATTCTGATGTTGACATCAATGCCTCTTATGAGCAAACTTGCAGCAATTCTTTAACCCTTGCCAATGATATTTTACTACAAGAGCAGGGGGATCACAGTTCTACATTAGCTGGCAGCTCGTCTGACTTATCCTCTACCAGCTCTTTGAACTCAGTGAGCATTAAAGAAGGCCAGACAGTGGACATTCTACTCGGGTGCAGCCTACTTCACCTTGCTTGCGAAACTGCAGATATTGGTATGCTGGAGCTCCTCCTACAGTATGGTGCAAATATTAATGCAACTAATTTGAAAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGAAAATCTGCTTTTGCAAGATTACTTCTTTCAAGGGGGGCTGATCCTCGGGTGGTAGATGAGGAGGAAAGAACCCCAATTGAGCTTGCTGCACAGTCATTTGATGACAATGAGGTCCTTGCTCTGTTGTCTGATTCGAATGGAAAACATTGGTAG 2451 0.4206 MQFSKLDDSPMFRKQILCQEESAESLRERSLKFYKGCRKYTEGLGEAYDEDIAFASSLEIFGGGHNDPLSVAFGGPVMTKFTIALREIGTYKEVLRSKVEHILNDRLFKFVNIDLQEVKESRKSFDKASIIYDQAREKFLSLRKGTKSDIVTALEEELHNARYAFDQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEHAALNEKMLEYKRKIDRERWFSNGSTGPPNGDRIQAISRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQHNKSSGPSSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERYLPSSPMGSGYHRCASESSSLGSSDFDHSAAEEYAADRRLATVHLERPSRSLQQQRSCIRSEKTIDMLRRVSGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSIWEELLQSRSAFQIDLVSTGKPCQSDSPSMKEKFIHAKYAKKIFVRKPKDNQCHLQVSQHIWEAVHTNDIKAVYRYIVNSDVDINASYEQTCSNSLTLANDILLQEQGDHSSTLAGSSSDLSSTSSLNSVSIKEGQTVDILLGCSLLHLACETADIGMLELLLQYGANINATNLKGQTPLHRCILKGKSAFARLLLSRGADPRVVDEEERTPIELAAQSFDDNEVLALLSDSNGKHW 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0348 816 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Lal13g0348 816 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Lal13g0348 816 ProSiteProfiles Ankyrin repeat region circular profile. 721 752 - -
Lal13g0348 816 CDD ArfGap 502 618 - -
Lal13g0348 816 ProSiteProfiles Ankyrin repeat profile. 754 786 IPR002110 GO:0005515
Lal13g0348 816 SUPERFAMILY PH domain-like 292 442 - -
Lal13g0348 816 Pfam Ankyrin repeats (many copies) 724 775 IPR002110 GO:0005515
Lal13g0348 816 Gene3D Arf GTPase activating protein 481 629 IPR038508 -
Lal13g0348 816 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
Lal13g0348 816 ProSiteProfiles Ankyrin repeat region circular profile. 754 786 - -
Lal13g0348 816 MobiDBLite consensus disorder prediction 328 347 - -
Lal13g0348 816 Gene3D - 630 815 IPR036770 -
Lal13g0348 816 SMART ANK_2a 754 783 IPR002110 GO:0005515
Lal13g0348 816 SMART ANK_2a 721 750 IPR002110 GO:0005515
Lal13g0348 816 SMART ANK_2a 787 816 IPR002110 GO:0005515
Lal13g0348 816 SMART arf_gap_3 499 631 IPR001164 GO:0005096
Lal13g0348 816 Pfam PH domain 293 426 IPR001849 -
Lal13g0348 816 SUPERFAMILY ArfGap/RecO-like zinc finger 499 626 IPR037278 -
Lal13g0348 816 Pfam BAR domain of APPL family 6 233 - -
Lal13g0348 816 CDD PH_ACAP 294 431 - -
Lal13g0348 816 SUPERFAMILY Ankyrin repeat 720 808 IPR036770 -
Lal13g0348 816 SMART PH_update 292 429 IPR001849 -
Lal13g0348 816 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Lal13g0348 816 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 811 - -
Lal13g0348 816 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lal13g0348 816 MobiDBLite consensus disorder prediction 329 347 - -
Lal13g0348 816 PANTHER CENTAURIN/ARF 1 811 IPR045258 GO:0005096
Lal13g0348 816 Pfam Putative GTPase activating protein for Arf 500 626 IPR001164 GO:0005096
Lal13g0348 816 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Lal13g0348 816 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Lal13g0348 816 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
Lal13g0348 816 CDD BAR_SFC_plant 14 215 IPR035670 -
Lal13g0348 816 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 631 IPR001164 GO:0005096
Lal13g0348 816 Gene3D - 284 437 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0348 Lal-Chr13 2189416 2199987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0348 503 625 C2H2 Transcription Factor Family AT4G21160 43.548 3.66e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0348 K12489 - gmx:100798227 1323.15