Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0347 ATGGCTCTTCAACAACAACCACTATCCCTCCATCACAACCCAAACCCCGTTGACGGCGAACCTGACGCTACAACTAACGGCGTAGATGACGGAGGCAAAGCACCAAGACTGCCACGTTGGACAAGGCAAGAGATTGTTGTTTTAATACAGGGAAAGAGAGATGCTGAGAATAAATTCAGAAGGGGTCGAACCGCCGGTTTATCATTCGGTTCGGGTCAGATTGAACCCAAATGGGCATTAGTTTCTTCTTACTGTTCAAAACATGGGGTGAACCGGGGTCCGGTTCAGTGCAGAAAGAGGTGGAGTAATCTCGCGGGAGATTATAAGAAGATCAAAGAATGGGAGTCTCAGATAAAAGATGAAACGGAATCGTATTGGGTTATGAGGAATGATTTAAGGAGAGAGAGAAAATTGCCTGGGTTTTTCGATAAGGAGGTTTTCGATATTCTTGATTCTGGGTCGCCGGTAACGGCTCTGTCGCCGGCGTTAGTATTAGCTCTATCGTCGCCGGAGGGTTATAGTGAGCCACCGCAGACTCACGTGTATGATAGTAATAGGAGTGTGGGTGGGTTGTTTTCTGATTTTGAACATGACGAGGTGGGTGGTAGTCCCAGTTCTGAGAAGAAGGATGTTCCTGTTGCTGCTACTCCTATCCCAGAGAAGCGATATCAACCAGTCTACCACGGTTCCCATGGCGAAGGTAATGCTCAAGGCGTGACCAACGGGAAACAGCCAGCTTCAAATCCAGAAATGGGCTCTACATCTCAAAGAGAACGGAAAAGGAAGCGTTTAGCATCTGATGGAGAGGAGGAAACTTTGCAATATCACTTGATTGATGTCTTGGAAAGAAATGGCAAAATGCTAAATACCCAACTTGAAGCTCAGAATATAAATTTCCAGTTGGATTGCCAGCAACGGAAGGATCATTCGAATAACTTGGTTGCTGTACTTGATAAGCTTGCAAATGCTCTTGGGAGAATTGCTGATAAATTATAG 996 0.4568 MALQQQPLSLHHNPNPVDGEPDATTNGVDDGGKAPRLPRWTRQEIVVLIQGKRDAENKFRRGRTAGLSFGSGQIEPKWALVSSYCSKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKDETESYWVMRNDLRRERKLPGFFDKEVFDILDSGSPVTALSPALVLALSSPEGYSEPPQTHVYDSNRSVGGLFSDFEHDEVGGSPSSEKKDVPVAATPIPEKRYQPVYHGSHGEGNAQGVTNGKQPASNPEMGSTSQRERKRKRLASDGEEETLQYHLIDVLERNGKMLNTQLEAQNINFQLDCQQRKDHSNNLVAVLDKLANALGRIADKL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0347 331 MobiDBLite consensus disorder prediction 192 269 - -
Lal13g0347 331 MobiDBLite consensus disorder prediction 1 36 - -
Lal13g0347 331 Pfam Myb/SANT-like DNA-binding domain 39 128 IPR044822 -
Lal13g0347 331 MobiDBLite consensus disorder prediction 234 253 - -
Lal13g0347 331 MobiDBLite consensus disorder prediction 254 269 - -
Lal13g0347 331 ProSiteProfiles Myb-like domain profile. 39 105 IPR001005 -
Lal13g0347 331 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 10 331 - -
Lal13g0347 331 Gene3D - 40 110 - -
Lal13g0347 331 CDD GT1 38 112 - -
Lal13g0347 331 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 10 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0347 Lal-Chr13 2184879 2188242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0347 25 136 Trihelix Transcription Factor Family AT1G13450 31.579 2.18e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lal13g0347 Myb_DNA-bind_4 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0347 - - gmx:100797767 441.039