Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0343 ATGTTCATCCAGCAACAAGACCAAGACCATGACCATCCCAATCTTGATGACATCAACAACAACAATGGCTATGCCCACGACGCTAAGACTCTCATCTCTGCCGTCAATTTTCTCTCTCGCAATCTCCCTCTTCCACCTCACCTCCTTAACTCCGTTAACAATATCTATCAAAACCCATTACTCAATGACAAAGTAGGGGATTCTAAAGAAGATTTAATGACAGATCTTGAAGATGCACTATCGAAGCAACGCCCGAATTGTGCATCAGGTTTCAAATTGGCGAAAGCAAGGGAAAACCGTTATCAAAGTCAGATTCAACACCGACTAAAACAACTTGAAGAATTGCCTTCAAGCAGGGGAGAGGATCTGCAGACAAAATGCCTGCTTGAACTTTATGGGCTAAAGCTAGCAGAGTTGCAGTCTAAAATTCGGTCTGAGGTGAGTTCTGAATACTGGCTCAATGTGAAATGTGCATATCCCGACAAACAGTTATTTGATTGGGGCATGATGCGATTGCAACGTCCACTGTATGGTGTTGGAGATCCATTTGCTATGGATGCAGATGATCAACTGAGGAAGAAACGGGATGCTGAGAGATTATCAAGATTAGAAGAGGAGGAAAAAAATCAAATAGAGACTAGAAAAAGAAGATTTTTTGCAGAAATACTTAATACCGTTCGTGAGTTCCAATTACAAATCCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGACGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCATCGCGAGCAGAAAAATTGAGATTCCAAGCCTTAAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGCAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAGAAGGACTCCAAACGTTCAGATGGTATTGAACCCTTGGAAGATTCTGAAGCTAATTTACCTGAGCCAGACACTTCAAAGAATGGAATTTCTAAGGAATCTCCTCTAGATGAAGATGTGGTAGATTCTGATCATAATGATGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATATAATTCTGCCATACATTCAATTCAAGAGAAGGTAACTGAGCAACCATCTATTCTTCAAGGTGGAGAGTTAAGACAATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAACAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACCATACAAACTATTTCACTGATAGCGTATCTTATCGAATACAAGGGCGTGGCAGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCAAATTGGGTCCATGAATTCGCAACATGGGTTCCGAGCATTAAAGCCATTCTTTATGATGGACGGCTTGAAGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGGGAGGGGAAGTTTAATGTTCTGTTAACGCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAGAATTCACTGGCACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTCTGCTCTAGCAAGAACCCTGGACTCTGGAGGCTATCACATCCAACGCAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTGTGGTCCCTGCTTAATTTTCTCCTTCCAAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTTCAGACCGAGTTGATGTCTCTCTTTCAGATGAAGAACAACTGTTGATCATTCGGCGTCTACATCAGGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATATCTTCCTCAGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTAACAATGCAACTTAGAAAATGCTGTAACCATCCCTACCTCTTCGTGGGAGATTACGATATGTATAGGCGTAAAGAAGAGATTGTCAGGGCATCAGGCAAGTTTGAACTTCTTGACCGTCTGCTCCCAAAACTTCGCAGAGCAGGCCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACGTTCTCGAAATTTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGACGGTTCAACAAAAACTGAGGAAAGAGGCTCTCTGTTAAAGAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATATTTGACAGCGATTGGAATCCCCAGATGGATCAACAAGCCGAGGATCGAGCACATCGTATTGGACAAAAAAAGGAAGTTAGGGTATTTGTGTTGGTTAGCGTGGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGACTTTTCAACACAACCTCGACAGCCCAGGACAGAAGAGAAATGTTAGAGGAGATTTTGCGTAGAGGTTCAAGCTCACTTGGGAATGATGTACCTAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCAGAAGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGGCAAAAGGAGAATTACAGAACTCGTCTCTTGGAAGAGCATGAATTGCCAGATTGGGTGTACGCTCCACTCAAGAAGGATGACAAGGCCAAAGCTTTCAACAGTACTAGTGTTACTGGAAAGCGGAAAAGAAAAGATGTGGTATATGCAGATACATTAAGTGATCTACAATGGGCGAAGGCTGTGGAGAGTGGGGTAGACATATCAACTCTTTCGGTTAAGGGGAAAAGAAGAGATCAATTCCGATCTGACAGTGTTGCACAAGCCAGTGATAATTCGGGGGCAGAAGAAAGGTTTTCAGAGTTAAGGACTGAAAATGTCCCCGTGGCAGATGAGAAAACAAGTGAAGATAGTTTTCATGCTTCAAAGAGACTCAAGCCTGAAGGAAGAAGTTCCCATGCGTACGATGATGTCAGAGGAAGTGGTTTGAATCAGCCCATATTATCCTGGAATACTCATAAAAAGAAGAGGTCGAGCTATCTTGGCCAAGGTTCATCATCTGATAGTAGAGGGCAGAACTCAAATGGAAAAGCAAACTGGAACTGA 3279 0.4199 MFIQQQDQDHDHPNLDDINNNNGYAHDAKTLISAVNFLSRNLPLPPHLLNSVNNIYQNPLLNDKVGDSKEDLMTDLEDALSKQRPNCASGFKLAKARENRYQSQIQHRLKQLEELPSSRGEDLQTKCLLELYGLKLAELQSKIRSEVSSEYWLNVKCAYPDKQLFDWGMMRLQRPLYGVGDPFAMDADDQLRKKRDAERLSRLEEEEKNQIETRKRRFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRASRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKRSDGIEPLEDSEANLPEPDTSKNGISKESPLDEDVVDSDHNDDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRQYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIEYKGVAGPHLIVAPKAVLPNWVHEFATWVPSIKAILYDGRLEERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKRIHWHYLIVDEGHRLKNHESALARTLDSGGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFSDRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPQKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDVLEIYLRLHDFKYLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEILRRGSSSLGNDVPSEREINRLAARSEEEFWLFEKMDEERRQKENYRTRLLEEHELPDWVYAPLKKDDKAKAFNSTSVTGKRKRKDVVYADTLSDLQWAKAVESGVDISTLSVKGKRRDQFRSDSVAQASDNSGAEERFSELRTENVPVADEKTSEDSFHASKRLKPEGRSSHAYDDVRGSGLNQPILSWNTHKKKRSSYLGQGSSSDSRGQNSNGKANWN 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0343 1092 MobiDBLite consensus disorder prediction 988 1092 - -
Lal13g0343 1092 MobiDBLite consensus disorder prediction 310 361 - -
Lal13g0343 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 617 IPR027417 -
Lal13g0343 1092 Pfam SNF2-related domain 394 683 IPR000330 GO:0005524|GO:0140658
Lal13g0343 1092 PANTHER ATP-DEPENDENT HELICASE BRM 26 1030 - -
Lal13g0343 1092 MobiDBLite consensus disorder prediction 1055 1092 - -
Lal13g0343 1092 SMART ultradead3 387 581 IPR014001 -
Lal13g0343 1092 MobiDBLite consensus disorder prediction 242 261 - -
Lal13g0343 1092 SMART helicmild6 732 816 IPR001650 -
Lal13g0343 1092 MobiDBLite consensus disorder prediction 1007 1046 - -
Lal13g0343 1092 Pfam Snf2-ATP coupling, chromatin remodelling complex 909 969 IPR029295 GO:0042393
Lal13g0343 1092 Gene3D - 359 616 IPR038718 -
Lal13g0343 1092 CDD SF2_C_SNF 694 827 - -
Lal13g0343 1092 Pfam Helicase conserved C-terminal domain 703 816 IPR001650 -
Lal13g0343 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 879 IPR027417 -
Lal13g0343 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 570 IPR014001 -
Lal13g0343 1092 MobiDBLite consensus disorder prediction 1 21 - -
Lal13g0343 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 706 873 IPR001650 -
Lal13g0343 1092 SMART SnAC_2 909 970 IPR029295 GO:0042393
Lal13g0343 1092 Coils Coil 194 217 - -
Lal13g0343 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 26 1030 - -
Lal13g0343 1092 Gene3D - 623 921 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0343 Lal-Chr13 2160452 2171424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0343 699 844 RAD5 or RAD16-like Gene Family AT5G43530 38.000 1.96e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal13g0343 SNF2_N 4.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0343 - - lang:109355051 1984.92