Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0341 ATGAGCAATGAAATCATCGCGCAGAAGCTTCCCCCTTCGATTCTTGTGGGTCGCTTCAAGGCACTTCTCAAGCAACGTGACGATGAACTCAGGGATTTTCCCGGTGCCCCCGTACCGCCACCTACCACCGACGAAATAGTGCAGATTTACGAGCTGCTCTTGTCGGAGCTCACGTGCAATTTGAAGCCAATCATCACCGATCTCACTATCATTGCGGAACAGCAAAGGGAACATGCTAAGGGTATTGCTGATGCAATTTGCGCTCAGATTCTTGAGGTTCCGGCAGATCAGAAGCTTCCTGCACTCTATCTTTTGGACAGTATTGTGAAGAATTATGGTCAAGAATATGTTAGATATTTCTCTTTACGTCTGCCAGAAGTTTTCTGTTTGGCATATAGGCAAGTCCAGCCTAGTTTGCATCCTGCTATGCGCCATTTGTTTGGAACCTGGTCAAAAGTCTTTCCACCTTCTGCCCTACATAAGATTGAAGCTGAATTGCAATTTTCTCAAACAGTTAATAATCAATCAAACACCATGAATTTCCTCAGGGCATCTGAATCTCCTCGACCTAGTCATGGTATTCATGTTAATCCAAAATACTTGCGGCAGTTAGATCGCTCAACTGTGGATAGTGTTGCTGGTGAAAAGTTAGACTCATCAGGAAAGGCTAGTAATACAAGTTTTGGCCTTGTAGCTAGCAACACACATCAATTTGTATCTAGTAGGGTTGGAACGCCCTCTTCACCTTCACGAATTGGAGTTGGTAGGCCTTTGTCTTCATCTATAGATGAATATGCAGTTGACAATTTTGCTACCAGGATAACTGAGAGAGAGTCTCCTCGTCCTGCTGTTGATTATGGAATAGTCGAAGCATCAGGTAGAGATGAAGAGTTGAGTGATTGGCATCGAAAGCAGTATTCTGGTGATGGTCGAAATCGGTTTCAAACGTCTCTGGCATACAGACTTAGTAATGGACATCAGCGTCAAAGTCCAAGAGCACTGATTGATGCATATGGCTGTGACAAAAGCCAAGAAACTTCAAGAAATAAGCCTTTGTTAGTTGAACGGCTGGACAGAAATGGTAAAGACAACATGTTGTCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAGGATATGAGTCCAACATTAGTAGACCATAGTAGGAATAGTGGTGTCTTCCCATCAACAATTGATTTCCCCAGGGAAAGGCCTGGTATTCTTGCAGCTAATGCAACTTCGCTAGAGCAAGATATCAGGAAGGGTTGGTCCAGCGGGTCTCAGATTCCTCCGGTGGATGATTCTTCTGTTATAGCAGAAGATACATTTCCCTCTTCAGCTTACGGTCATCTATCCATGGGTCAGGCATCTCGATTTCAGAATCAAATAAATCAGAGTCTAGGATCTCGTCAACCTCATGAAGCTTGGAAGATTTCTCATCATCCATCTAATTCTTCACAACACTTATTAAATATTAGGGGAGGACTAAGGAGTCTTGTAATGCCCCCGATTGATAACATTCTCAATACAAATGCAAACTCATTTGGGATTCAACCCTCCTCATCAAGGATTTCTGGTCTTCTCTCTAATATGGAGACTCGTCCACCAATTTTGCCTGCATCTTTTGAAATAAGGCCTTCAGTAAATGTGTATGCCACTCGTCCTCCCACCTTAAATCCAATGTTTCCATTGCAAAGACATGTCAGGAGTCAGTTTGAAGCTATAAACACTAGTAATCCCATCATGAGTCATGGTCCAAATAAATCTTCATATATGCCTGAACAGTTGTTGGACAGTGTTGAGAACAAGGATACAGCTAAAGCAAAGACACATCAGTTGCCTAATCATCTTGCTGGACTACCACAGCTACAAAATTTTCCATCTCAGGATCCATCTGCCCCTCAATATAGTCATGGGATCTCTTTGCAAGGACATGGTGCTTCTCTAACTACAGCCATGTCAAATCCGCTACCTGTTACACAATTCCCTCTATCAACCCAAGGTATTGGAAATAGCTCTTTTAATTTTCAAGGGGGAGCCCATCCGCCTCTACCTCCAGGTCGCCCTCATGCTCCATTACAAATGATTCCTCATCGAAATGCTAGTCCATTCATGCAAAGTCAACAGCCAACTGTTGCATATACTACTTTAATTAATTCACTAATGTCACAAGGCATGATCTCATTGGCTAACCAGCCCCCTATACAGGATTCTGTTGGAATTGAGTTTAATCCAGATATTCTGAAACTTCGTCATGAATCTGCAATCAATGCTTTATATGGTAATCTCCCAAGACAATGCACCACCTGTGGGCTCCGTTTCAAATGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACCAAGAACCGGATGTCTAAAAATCGTAAGCAGAAGCCATCTCGTAAGTGGTTTGTGAGTGGCAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCAGGTTTTTTGCAAACTGAGATAGTAGAGGAAAAGAAAGATGATGAAGAGTTGGCAGTTCCAGCTGAAGAGGACCAGAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAAGAATGGATGTATAGAGGAGCTGTATACCTGAATGCACCCAAGGGAACGACAGCAGGCATGGACAGGTCACAGTTAGGCCCCATTATCCATGCTAAATGCAGATCAGAATCTAGCGTGCCCCCCTCTGAAGATTTTGGACATGATGCAGGGGGTGCCAATGAAGAGGACAGTCAAAGAAAACGAAAGCGGAGTTGA 2811 0.4347 MSNEIIAQKLPPSILVGRFKALLKQRDDELRDFPGAPVPPPTTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICAQILEVPADQKLPALYLLDSIVKNYGQEYVRYFSLRLPEVFCLAYRQVQPSLHPAMRHLFGTWSKVFPPSALHKIEAELQFSQTVNNQSNTMNFLRASESPRPSHGIHVNPKYLRQLDRSTVDSVAGEKLDSSGKASNTSFGLVASNTHQFVSSRVGTPSSPSRIGVGRPLSSSIDEYAVDNFATRITERESPRPAVDYGIVEASGRDEELSDWHRKQYSGDGRNRFQTSLAYRLSNGHQRQSPRALIDAYGCDKSQETSRNKPLLVERLDRNGKDNMLSTSWQNTEEEEFDWEDMSPTLVDHSRNSGVFPSTIDFPRERPGILAANATSLEQDIRKGWSSGSQIPPVDDSSVIAEDTFPSSAYGHLSMGQASRFQNQINQSLGSRQPHEAWKISHHPSNSSQHLLNIRGGLRSLVMPPIDNILNTNANSFGIQPSSSRISGLLSNMETRPPILPASFEIRPSVNVYATRPPTLNPMFPLQRHVRSQFEAINTSNPIMSHGPNKSSYMPEQLLDSVENKDTAKAKTHQLPNHLAGLPQLQNFPSQDPSAPQYSHGISLQGHGASLTTAMSNPLPVTQFPLSTQGIGNSSFNFQGGAHPPLPPGRPHAPLQMIPHRNASPFMQSQQPTVAYTTLINSLMSQGMISLANQPPIQDSVGIEFNPDILKLRHESAINALYGNLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSGRMWLSGAEALGTESVPGFLQTEIVEEKKDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPKGTTAGMDRSQLGPIIHAKCRSESSVPPSEDFGHDAGGANEEDSQRKRKRS 936
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0341 936 CDD CID_Pcf11 50 166 - -
Lal13g0341 936 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 910 - -
Lal13g0341 936 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 910 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lal13g0341 936 ProSitePatterns Zinc finger C2H2 type domain signature. 770 790 IPR013087 -
Lal13g0341 936 MobiDBLite consensus disorder prediction 903 936 - -
Lal13g0341 936 Gene3D - 40 168 IPR008942 -
Lal13g0341 936 MobiDBLite consensus disorder prediction 920 936 - -
Lal13g0341 936 ProSiteProfiles CID domain profile. 42 170 IPR006569 -
Lal13g0341 936 SUPERFAMILY ENTH/VHS domain 42 168 IPR008942 -
Lal13g0341 936 SMART 558neu5 45 167 IPR006569 -
Lal13g0341 936 Pfam CID domain 61 161 IPR006569 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal13g0341 Lal-Chr13 2148021 2154312 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0341 710 936 C2H2 Transcription Factor Family AT4G04885 69.163 3.50e-103 338
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0341 K14400 - gmx:100794796 1364.36