Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0339 ATGGATGATGATCAAGTTCACATTGGTTCCATCTTTGATGACAAATATGCTCAAAAGTTGGATGATGATGATGTTGTTTTTGTCTCTGATGATGAGTATGCTCAAGAGTTGCAGTTGCAAGAGGCCCTCATGGCCTCTGTCATTCCGCGAAACATTACCATCAATCGCCGCTCATTATCGTCATCATCATTACCATCTTCATCCAAAGCTGTTCAAGTTAGCCTTGATTGCAAGAAGATAAAGTTTGCGAACAAAGAAACGGGAGAGTCCTCACGAATCATCTGCGAGATATGCGCAGAAACCAAAGACAATGAACAAATGTTCTTGAACAAGTTATGTGGCCATTCATTCTGCTCTGAATGTGTGATCAAACAAGTGGCCACAAAGGTTCAAGAGAACATAGCAGGTGTTGCATGCCCTGGTTTGGACTGCAAGAGTGTGTTGAACATTGATGTTTGTAGGCCATTGCTTCCAAAAGTACTGGTTGAAAGGTGGGATGAGGCACTGTGTGAGGCACTTTTTCTTGCAGTACCCAAATTTTATTGCCCATTTAAGGATTGTTCTGCTATGATGTTGGCTGATAATGAAGGGGAAAACATTAGAGAGTCAGAGTGTCCCTTTTGTCACAGACTCTTCTGTGCAAAGTGTAATGCTCCTTGGCATTCTGGGGTTGATTGTGATGTGTTTCAGAAACTGAATGAGGATGAGAGAGGATGA 717 0.4226 MDDDQVHIGSIFDDKYAQKLDDDDVVFVSDDEYAQELQLQEALMASVIPRNITINRRSLSSSSLPSSSKAVQVSLDCKKIKFANKETGESSRIICEICAETKDNEQMFLNKLCGHSFCSECVIKQVATKVQENIAGVACPGLDCKSVLNIDVCRPLLPKVLVERWDEALCEALFLAVPKFYCPFKDCSAMMLADNEGENIRESECPFCHRLFCAKCNAPWHSGVDCDVFQKLNEDERG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0339 238 Gene3D - 180 231 - -
Lal13g0339 238 Pfam IBR domain, a half RING-finger domain 180 226 IPR002867 -
Lal13g0339 238 SMART ibrneu5 163 226 IPR002867 -
Lal13g0339 238 ProSiteProfiles TRIAD supradomain profile. 91 238 IPR044066 -
Lal13g0339 238 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Lal13g0339 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 173 IPR013083 -
Lal13g0339 238 SUPERFAMILY RING/U-box 89 172 - -
Lal13g0339 238 ProSiteProfiles Zinc finger RING-type profile. 95 140 IPR001841 -
Lal13g0339 238 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 235 - -
Lal13g0339 238 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 235 IPR031127 GO:0004842|GO:0016567
Lal13g0339 238 SUPERFAMILY RING/U-box 167 231 - -
Lal13g0339 238 Pfam Zinc finger, C3HC4 type (RING finger) 95 132 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0339 Lal-Chr13 2126244 2126960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0339 15 231 C3H Transcription Factor Family AT2G19610 24.898 1.77e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0339 K11975 - qsu:112001859 263.848