Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0334 ATGGCTTCTGCATTTTCAATCGCAACACCAACAACTCTGAGAAATGTTCCAGAACTCACAATCAGAAACAGAGCTTGTTTCAACCGTAACCCTACCGTTTCAATTGGAGGGTTTCATAAACAACACCGTCTCAATCTGAATCTGAGTATGAATGGTCGTAAGGGTTTATCTTCTATGGTAGTTAGGGCAAGTAGTGAAGAAGCAGTAGTTCCACAATCGAAAGTGACTCACAAAGTATATTTTGATATAAGTATTGGAAATCCAGTTGGTAAGCTTGCTGGAAGGATTGTGATTGGATTGTACGGTGACGATGTGCCACAAACCGTAGAGAATTTCCGTGCCCTTTGCACCGGAGAAAAGGGTTTCGGTTATAAGGGCTCTGCGTTCCACCGTGTTATCAAGGATTTCATGATTCAAGGAGGCGATTTTGACAAGGGCAATGGAACTGGAGGCAAAAGTATTTATGGCCGTACTTTCAAAGATGAGAACTTTAAATTGACTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGCCCCAACACAAATGGTAGTCAGTTTTTCATATGCACTGTGAAGACACCTTGGTTGGATCAGAGACATGTTGTATTTGGCCAAGTTTTGGAAGGCCTGGACATTGTTAGGTTGGTTGAGTCACAGGAGACAGATAGGGGTGACCGTCCTACAAAGAAGGTGGTTATCAGTGACTCCGGTGAGCTTCCAATTGCTTGA 735 0.434 MASAFSIATPTTLRNVPELTIRNRACFNRNPTVSIGGFHKQHRLNLNLSMNGRKGLSSMVVRASSEEAVVPQSKVTHKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLTHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGLDIVRLVESQETDRGDRPTKKVVISDSGELPIA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0334 244 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 240 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 115 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 141 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 187 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 199 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 200 215 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 MobiDBLite consensus disorder prediction 221 244 - -
Lal13g0334 244 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 44 243 - -
Lal13g0334 244 CDD cyclophilin_ABH_like 77 239 - -
Lal13g0334 244 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 237 IPR002130 GO:0000413|GO:0003755
Lal13g0334 244 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 124 141 IPR020892 GO:0003755|GO:0006457
Lal13g0334 244 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 44 243 - -
Lal13g0334 244 SUPERFAMILY Cyclophilin-like 70 241 IPR029000 -
Lal13g0334 244 Gene3D - 63 243 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0334 Lal-Chr13 2102896 2105166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0334 94 235 U-box Gene Family AT5G67530 50.350 2.97e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0334 K03768 - sind:105168448 355.14