Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0323 ATGGATCGAAAGAGGGTAAGACCCGCTTCTGATTTCAACACCAACGGCGCCTCCAAGAAATTCAAGCCAGAAATGGAGTCTTTTACAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGTACCTCTGGCTGTCCATTTGGCGAGGGGTGTCATTTCCTGCATTATGTTCCTGGTGGCATCAAAGTTGTCTCTCAGGTGATCAATGTCGGTAACAGTCCTGCTATTCCACAAGGTGGTAGAAATCCAGCTGCTCCACCATCCTTCCCAGATGGGTCTTCTCCCCCAGCTGTTAAAACCCGATTGTGCAACAAGTATAATTCAGCTGGAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAACCTACAGCTCCATCATATGAAGATCCTCGTGGCTTTGGACAAATGCAAAGCAACAGGATTGGTGGTCGAGTTGAGCCCCCACCTCAGACTCATGGAGCTGCCGCTGGCTTTGGGGCCTCAGCTACTGCAAAGATTAGTATCAATGCATCTCTAGCTGGAGCTGTCATTGGAAAAAATGGTATCAACTCTAAGCAAATTTGTCGCGTAACTGGAGCAAAACTTTCTATTAGGGACCATGACTCAGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATTAAACAAGCCAGTGCAATGGTTCATGAACTTATTCTAAATGTCAGTTCTGCTGCCACTGGACCTCCAATGAAAAACTTTACTAAACAGACTTCTGCCCCTGCTAACAACTTCAAGACTAAGATGTGTGAAAACTTTGCTAAAGGCTCATGCACATTTGGGGACAGGTGCCACTTCGCCCATGGACCAAATGAACTACGCAAGACTTGA 894 0.4586 MDRKRVRPASDFNTNGASKKFKPEMESFTTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKVVSQVINVGNSPAIPQGGRNPAAPPSFPDGSSPPAVKTRLCNKYNSAGGCKFGDKCHFAHGEWELGKPTAPSYEDPRGFGQMQSNRIGGRVEPPPQTHGAAAGFGASATAKISINASLAGAVIGKNGINSKQICRVTGAKLSIRDHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSAATGPPMKNFTKQTSAPANNFKTKMCENFAKGSCTFGDRCHFAHGPNELRKT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0323 297 Pfam KH domain 175 237 IPR004088 GO:0003723
Lal13g0323 297 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Lal13g0323 297 MobiDBLite consensus disorder prediction 77 96 - -
Lal13g0323 297 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 296 - -
Lal13g0323 297 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Lal13g0323 297 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Lal13g0323 297 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Lal13g0323 297 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lal13g0323 297 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Lal13g0323 297 MobiDBLite consensus disorder prediction 1 33 - -
Lal13g0323 297 SMART kh_6 171 241 IPR004087 GO:0003676
Lal13g0323 297 SUPERFAMILY CCCH zinc finger 265 295 IPR036855 GO:0046872
Lal13g0323 297 SUPERFAMILY CCCH zinc finger 99 131 IPR036855 GO:0046872
Lal13g0323 297 CDD KH-I 176 237 - -
Lal13g0323 297 Gene3D - 262 297 - -
Lal13g0323 297 Gene3D - 95 132 - -
Lal13g0323 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 243 IPR036612 GO:0003723
Lal13g0323 297 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lal13g0323 297 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Lal13g0323 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Lal13g0323 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Lal13g0323 297 Gene3D K Homology domain, type 1 166 261 IPR036612 GO:0003723
Lal13g0323 297 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Lal13g0323 297 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 8 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0323 Lal-Chr13 2027964 2033750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0323 34 139 C3H Transcription Factor Family AT1G68200 26.415 9.60e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal13g0323 KH_1 7.4e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0323 - - gmx:100818781 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0323 13 2027964 2033750 Lal24g0261 24 1850945 1857170 LSH