Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0313 ATGGAGAATTCGGAAAAGATAGAAGAAGAGGTAGCAAAGGTAATTGAAGAAGCAAAAGATGTTGAAGATTCAGTCTCAGCTCATATATCAAAAACCACAATTGATGAACAATCACTTCAACAACGTGCCCTTTCTCTTCATTCCAAAATCAGTTCCCTTCGTTCTTCCCTTTATTCTCTTCTCCCTAACAACCCCACTTTACTTCATAAGTTGGATGAAGATTTGCAAAGAGCAACATGCATCATGGTTGATGGTGATGCTGCTACCCTCCTTCCTGGTCATGCTCATGGAAAATTTCTTAGGATGTTTATGGGACCTATTAATGTGCGTGCCTCCAAGAAGGATGTTCAGCTCAAGGTTAAAGAGGAATACAACAGTTACAGAGATAGAACTGCCCTGTTGTTCCTCCTTTTTCCAGCGATACTGCTTATTCTACGATCTTGGGTTTGGGAAGGATGCTTACCAGCTTTCCCCGTTCAGATTTACCAGGCATGGCTGCTATTCCTTTATGCTGGTTTGGCATTCCGAGAGAACATACTGAGAGTCAATGGAAGTGATATTCGTCCATGGTGGATATATCATCATTATTGTGCTATGGTAATGGCTCTTGTGAGTCTCACTTGGGAAATTAAAGGACAACCAGATTGTGAAAAGGCACAGATAGGTGTACAACTTTTCCTACAGTGGGCTATGATGCAAGGAGTTGCAATGCTTTTGCAAAATAGATATCAACGCCAGAGACTTTATACTCGTATTGCGTTGGGAAAGGCTAAGAGGATGGATGTGGTATGGGGGGAAACAGCTGGAGTGGATGGCCAACTATGGTTACTGTGTCCCATGCTTTTCATATTGCAGGGATTTGAAGCATATGTTGGAGTGTTGTTGCTCCAGAGTGCATTTGTTGGGGTTTTTTATGAGTGGCAGGTAATATTTTGTGGTGTCCTGTTGATCTTGATGGCTGTTGGGAACTTCATAAATACAGTACAGACTCTAATGGCTGAGGATTTTTTGCACTTTGTTTCAGTTTTGACCACAATTCAAGCTAGTGATCAATTTGGCTTTGTTTGTATCATTAATCATTTAATATCTGCACATGCTTCTCCTCCTGGTTACTTTGCCCGCCTGGAGAATTCAAATCGCAGCAAAGACAATTTACATATGAATACGAAGACAAGGATGCGTCGGTGGCTTTGCTGTACTTTTCAGGTGGAAGAGTCTTACCCATCAAATGAAAATGAGCACCTGAAAAGCCCAAGGAATTATGGAGATGGAATGCCTTCTGCTTCTTCCTTGATCCCACCTAGTGTTAAAAGAGGCTTTGATTTTTGTAGTTCATGTTGCAACCACAAAGGCTCAAAGGCATCAGCTCCTATCAAACCTGAAACACAAAAGGCACCACCACCTATTGAAGTTCCAGCATTATCTTTAGATGAGCTGAAAGAAAAGACTGACAACTTCGGATCAAAGTCATTGATTGGTGAAGGATCATATGGAAGGGTGTATTATGCAACCTTGAACAACGGAAAAGCTGTGTCTGTGAAAAAGCTTGATGTTTCCATGGTCTCAAGATTGAAAAATGACAATTTTGTTGAGTTGCACGGTTATTGTATTGAGGGAAATCTCCGTGTACTTGCATATGAGTTTGCAACAATGGGCTCTCTTCATGACATATTGCATGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGGCCAACTCTTGATTGGATACAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTAGAGTATTTACACGAGAAAGTTCAACCACCTGTTATTCACAGAGATATCAGATCCAGTAATGTGCTTATCTTTGAAGGTTACAAGGCTAAGGTAGCTGATTTTAACCTTTCAAATCAGGCTCCTGACATGGCTGCACGCCTTCATTCTACTCGAGTGCTAGGAACTTTTGGGTATCATGCTCCAGACTTTTGTTGTCTTGGCAAACTCTACAGATATGCAATGACTGGCCAGTTGACTCAGAAGAGTGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGATCATACCATGCCTCGTGGACAGCAAAGTCTTGTCACATGGGCTACCCCCAGATTAAGTGAGGATAAAGTTAAACAATGTGTCGACCCAAAATTGAAGGGAGAATACCCCCCTAAAGGAGTTGCTAAGCTTGCAGCTGTTGCAGCACTGTGTGTGCAGTATGAAGCAGAGTTTAGGCCAAATATGAGCATTGTTGTAAAAGCACTCCAACCACTTCTGAAGACTCCTGCTCCTGCTGCCCCAGAAAGTTTAAGCAAATAA 2331 0.4204 MENSEKIEEEVAKVIEEAKDVEDSVSAHISKTTIDEQSLQQRALSLHSKISSLRSSLYSLLPNNPTLLHKLDEDLQRATCIMVDGDAATLLPGHAHGKFLRMFMGPINVRASKKDVQLKVKEEYNSYRDRTALLFLLFPAILLILRSWVWEGCLPAFPVQIYQAWLLFLYAGLAFRENILRVNGSDIRPWWIYHHYCAMVMALVSLTWEIKGQPDCEKAQIGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPMLFILQGFEAYVGVLLLQSAFVGVFYEWQVIFCGVLLILMAVGNFINTVQTLMAEDFLHFVSVLTTIQASDQFGFVCIINHLISAHASPPGYFARLENSNRSKDNLHMNTKTRMRRWLCCTFQVEESYPSNENEHLKSPRNYGDGMPSASSLIPPSVKRGFDFCSSCCNHKGSKASAPIKPETQKAPPPIEVPALSLDELKEKTDNFGSKSLIGEGSYGRVYYATLNNGKAVSVKKLDVSMVSRLKNDNFVELHGYCIEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWIQRVRIAVDAARGLEYLHEKVQPPVIHRDIRSSNVLIFEGYKAKVADFNLSNQAPDMAARLHSTRVLGTFGYHAPDFCCLGKLYRYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKTPAPAAPESLSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0313 776 Gene3D Transferase(Phosphotransferase) domain 1 550 769 - -
Lal13g0313 776 Coils Coil 4 24 - -
Lal13g0313 776 ProSitePatterns Tyrosine protein kinases specific active-site signature. 600 612 IPR008266 GO:0004672|GO:0006468
Lal13g0313 776 SMART tyrkin_6 486 759 IPR020635 GO:0004713|GO:0006468
Lal13g0313 776 ProSitePatterns Protein kinases ATP-binding region signature. 492 515 IPR017441 GO:0005524
Lal13g0313 776 SUPERFAMILY Protein kinase-like (PK-like) 466 759 IPR011009 -
Lal13g0313 776 ProSiteProfiles Protein kinase domain profile. 486 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0313 776 Pfam Protein tyrosine and serine/threonine kinase 491 759 IPR001245 GO:0004672|GO:0006468
Lal13g0313 776 Gene3D Phosphorylase Kinase; domain 1 451 548 - -
Lal13g0313 776 Pfam TMPIT-like protein 4 333 IPR012926 GO:0016021
Lal13g0313 776 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 449 772 - -
Lal13g0313 776 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 379 431 - -
Lal13g0313 776 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 379 431 - -
Lal13g0313 776 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 ISOFORM X2 449 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0313 Lal-Chr13 1955336 1963552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0313 474 770 Receptor kinase-like Gene Family AT3G58690 45.338 3.63e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lal13g0313 TMPIT 4.6e-100 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0313 K13436 - gmx:100790016 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0313 13 1955336 1963552 Lal13g0313 13 1955336 1963552 ECH
Lal12g0331 12 2368040 2371368 Lal13g0313 13 1955336 1963552 LSH
Lal13g0313 13 1955336 1963552 Lal24g0255 24 1812795 1817779 LSH