Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0300 ATGGCGAAAACAAACTCATCACAGGGAAGGAAGAGAGTTGATGCTGTTGATTCTCGTGCTGCTTCCGTTCTTGTTCGCGGTAAAGACGGAAGTGCTTTCACTCGTTGTGAAGAGTGCAAAAAGGATGTTCCGGTAGCACTCATCAGCATGCACAATTGCAGCTTGGAAGCTAAGATTAAAATGAATCTTGAGTCTCAAGTTGTGGAGGCTGCTGCTGAAGTGAAGAAGCCAGAGAGGAAGAAGCCCAAATCTAAAGAACCAAATCCTAAAAGGGCTAAAGGAGAAAAAGTTAAGAAGATTAAGGATCCTAACATGCCTAAGCGTCCTGCAACAGCCTTCTTTCTCTTTTTGGATGACTTTAGAAAATCTTTTAAAGAAGAAAATCCTGATTCTAAAGATGTTAAACGGGTAGGTAAAGAGGGTGGTGAGAAGTGGAGATCCATGACTGATGAGGAAAAGAAGCCTTATTTGGATAAATTTGCTGAACTCAAGGCAGAGTATGAGAAAGCTATGGAAATCTATAAGTCTACTGAAGATGAGGGAGAGGAACATGTGGGTTCAGACAAATCTGATAAGGAAGCTGCTCCAGCTGAAGTGGAAGAGTTAACTGATGAGGAGTAG 621 0.4203 MAKTNSSQGRKRVDAVDSRAASVLVRGKDGSAFTRCEECKKDVPVALISMHNCSLEAKIKMNLESQVVEAAAEVKKPERKKPKSKEPNPKRAKGEKVKKIKDPNMPKRPATAFFLFLDDFRKSFKEENPDSKDVKRVGKEGGEKWRSMTDEEKKPYLDKFAELKAEYEKAMEIYKSTEDEGEEHVGSDKSDKEAAPAEVEELTDEE 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0300 206 Pfam HMG (high mobility group) box 106 175 IPR009071 -
Lal13g0300 206 MobiDBLite consensus disorder prediction 174 206 - -
Lal13g0300 206 Gene3D High mobility group box domain 101 178 IPR036910 -
Lal13g0300 206 MobiDBLite consensus disorder prediction 174 197 - -
Lal13g0300 206 SUPERFAMILY HMG-box 97 177 IPR036910 -
Lal13g0300 206 MobiDBLite consensus disorder prediction 71 105 - -
Lal13g0300 206 MobiDBLite consensus disorder prediction 125 150 - -
Lal13g0300 206 Coils Coil 160 180 - -
Lal13g0300 206 CDD HMGB-UBF_HMG-box 106 172 - -
Lal13g0300 206 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 106 175 IPR009071 -
Lal13g0300 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 195 - -
Lal13g0300 206 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 195 - -
Lal13g0300 206 MobiDBLite consensus disorder prediction 70 106 - -
Lal13g0300 206 SMART hmgende2 105 176 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0300 Lal-Chr13 1848814 1851706 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lal13g0300 HMG_box 2.7e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0300 K25507 - gmx:100810345 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0300 13 1848814 1851706 Lal13g0300 13 1848814 1851706 ECH