Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0294 ATGAAGAGAGAAAGAGAAATTGATAGCTCAACCATAGCCAACTATTTGATGTTACTTTCAGGTGGAGGTGAATTTGAGACAACCTATTTCAACTCTTCCAACAACAACAACCGTGTGTTCGAGTGCAAGACATGTAACCGCCAATTCCCGTCGTTTCAAGCACTAGGTGGCCACCGTGCTAGTCACAAGAAGCTAAGGTTGATGGGGGAAGGAGACCAAATGGTTAATGATTCACCACCAAAGCTTAAAACACATTTGTGTTCTATTTGTGGTTTGGAATTTGCAATAGGGCAAGCTTTGGGAGGCCATATGAGGCGTCATAGAGTAGCAACTAATTCAAATGGAAACATGCAAAGTTCTATTACGACTCTGAGTAATAGTGGTGGTGATGGTGGTGATAACAGCGACGATGCAAAGAGAATGAAGGGAAATAGTAAGAGAGTTTTGTTTTTGGATTTGAATTTAACACCATTAGAGAATGATATGGAGATTTTGAAGATTAGACAGACAATTCCTTTGGTGGATTGTTTCAATTGA 537 0.4004 MKREREIDSSTIANYLMLLSGGGEFETTYFNSSNNNNRVFECKTCNRQFPSFQALGGHRASHKKLRLMGEGDQMVNDSPPKLKTHLCSICGLEFAIGQALGGHMRRHRVATNSNGNMQSSITTLSNSGGDGGDNSDDAKRMKGNSKRVLFLDLNLTPLENDMEILKIRQTIPLVDCFN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0294 178 Pfam C2H2-type zinc finger 39 64 - -
Lal13g0294 178 Pfam C2H2-type zinc finger 85 108 - -
Lal13g0294 178 SMART c2h2final6 85 107 IPR013087 -
Lal13g0294 178 SMART c2h2final6 40 62 IPR013087 -
Lal13g0294 178 MobiDBLite consensus disorder prediction 112 140 - -
Lal13g0294 178 PANTHER ZINC FINGER PROTEIN ZAT5 11 175 - -
Lal13g0294 178 PANTHER ZINC FINGER PROTEIN ZAT12 11 175 - -
Lal13g0294 178 Gene3D Classic Zinc Finger 37 107 - -
Lal13g0294 178 SUPERFAMILY beta-beta-alpha zinc fingers 38 107 IPR036236 -
Lal13g0294 178 MobiDBLite consensus disorder prediction 112 132 - -
Lal13g0294 178 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Lal13g0294 178 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Lal13g0294 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0294 Lal-Chr13 1816778 1817314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0294 12 161 C2H2 Transcription Factor Family AT2G28710 47.436 1.15e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g0294 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0294 - - pvu:PHAVU_008G014600g 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0317 12 2222814 2223320 Lal13g0294 13 1816778 1817314 ECH
Lal13g0294 13 1816778 1817314 Lal13g0294 13 1816778 1817314 ECH
Lal12g0317 12 2222814 2223320 Lal13g0294 13 1816778 1817314 LSH
Lal13g0294 13 1816778 1817314 Lal24g0237 24 1703725 1704225 LSH