Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0259 ATGTCTGAGACATCTACTGTCTCGCCAGTCTTTCAGTCCATTAAGTCGTTGCCACCGAAGTTCAAGTTTACTAATAATCCAAGCCCAGGACTTGTGGGAAAACATGTAAATGGTAAATTGAGAAGTGCTGTTCCAATTGGATCAGGTAGTCCTGGAAATAGTGTACTAGTTGTGGAGGATTCGAACAAAGTTCAGGGTCGTGCTGGTGGCATGGATATTTTTGATGAGGACTCGCCATATGGTGGAAAAAGTAGTTCATTAGAAGGCAGGCCATTGGATGCTGATGTTCCACTGCCTCTCCCATCAAATTCGACATCCTCTAGGGAGTACAAGTGGAGTGATACAACTCCTTATGCTTCAAAGAAGTTCACTATTTATGTATTTCAGAAGCTTCAGTCTTGGTTTCAACTTTCAAATGGGAATTGGGAGCTGGTGAAGATAATAACAACTTCTGGAACTGAATCTGTCATTACACTGTCTGATGGGAAGGTTTCAAAGGTTAAAGATGAAACTTTGGTACCAGCAAATCCTGATATTCTTGATGGAGTGGATGATCTCATGCAACTTAGTTATTTAAACGAACCATCAGTTTTATACAACCTGCAATATAGATACAATCAAAATATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTGTATGGTAATGATTATATTGAAGCCTACAAGTGTAAAGCAATTGAAAGCCCTCATGTATATGCCATAACAGACACAGCCATGCGAGAAATGATGCGGGATGAAGTTAATCAATCTATTATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCCACCCTTGGAGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACCAATCCAATACTAGAAGCGTTTGGTAATGGGAAAACGTTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGAGAAGCTAAATCTACAAAGTGTAGATGACTATAAATATCTAAATCAGAGCAACTGTTATTCAATTACTGGTGTTAATGATGCAGAAGAATTTCGTATAGTCAAGGAAGCTCTGGATGTTGTCCACATTAGCAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTTTTATGGTTAGGGAACATATCATTTGCTGTGGTTGATAATGAAAATCATGTTCAAGCTGTTGAAGATGAGGGGCTGTTGAGTACTGCCAAGTTGATTGGCTGTGATATTGAAGACCTCAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATCGTCCAAAAGTTAACTCTAACGCAGGCTATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGTTTGTTTGATTGGCTGGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGACGCACAGGCAGATCAATCAGCATTCTAGATATATATGGCTTTGAATCATTCAATAGAAACAGTTTTGAGCAGTTCTGCATAAACTATGCAAATGAAAGATTACAACAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATACAAGATGGCATTGATTGGGCTAAAGTTGAATTTGAGGACAACCAAGGCTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGTTACTATCCCTGTTAGACGAAGAGTCCACGTTCCCAAATGGCACAGATTTAACATTTGCCAACAAGCTTAAGCAGCATTTGAATTCTAATTCATGCTTCAAAGGAGAACGAGACAGGGCCTTTACTGTGTCCCATTATGCAGGGGAGGTCACTTATGATACAACTGGATTCTTGGAAAAGAACCGGGACCTATTGCACTTGGACTCCATCCAGCTTCTCTCCTCAAGCACATGTCATCTTCCTCAGATATTTGCATCCCACATGCTTACTCAGTCCGAGAAGCCTGTAGTTGGTGCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGTCAATTATTCCAACTGATGCAACGATTAGAAATCACTACCCCACATTTCATTCGCTGCATTAAGCCCAACAACCTCCAATCACCTGGATCATATGAGCAAGGACTCGTGCTGCAGCAATTGAGATGTTGTGGAGTTCTGGAAGTGGTTCGAATATCAAAATCAGGCTTTCCAACTAGAATGTCTCACCAAAAGTTTGCCAGAAGATACGGTTTTCTTCTCCTCGAGAACGTGGCATCTCAGAATCCACTTAGTGTTTCTGTTGCAATTCTTCATCAGTTTAAAATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCAGAACAGGGCAGATTGGAGTGCTTGAAGATACTCGAAATCGTACTCTCCATGGCATTCTGTGTGTGCAAAGTTCTTTCAGGGGTTACCGAGCTCGTTGTTACCGCAAGGAGCTTTCGGGAGGAATCACTACCCTTCAGTCATTTATTAGAGGAGAGAGAAGCAGAAAGGGGTATGTAGCTTTACTTCAGAGATACAGAGCTGCTGTTGTTATACAGAAGTGGATAAAAATGGTTTTTTCAAGAATCAGACTGAAGGCTGCCAATGATGCCGTAGTTGTTATACAATCATTCATTCGTGGTTCGTTAGTCAGAAAATGCTCAGGAGATATTCGATTGTTGAAATCTGGAGGCTTGAAGACTAGCGAGTCGGGTGAGGTTCTGGTAAAGTCATCTTTCCTTGCTGAATTACAACGCCGAGTACTTAAGGCTGAAGCTGCCCTGAGAGAGAAGGAAGAAGAAAACGACATTCTTCACCAACGTCTTCAACAGTATGAGAGCAGATGGTCTGAGTATGAATTAAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCTTACAGTCTAGCCTCTCAATTGCAAAGAAGAGCCTTGCTATGGATGACTCTGAAAGAAATTCAGATGCATCTGTGAATGCAAGTGAAGAGAGGGAATACAGCTGGGATATGGAAAGTAATCACAGGCGCCAAGAAAGCAATGGGGGGAGATCAATGAGTGCTGGTTTGAGTGTGATAAGTCGAATGGCTGAAGAATTTGAGCAGAGAAGTCAAGTATTTGGAGATGATGCCAAGTTCTTAGTTGAGGTAAAATCTGGTCAAATAGAAGCAAGTTTGAGCCCTGACAGAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCATGGAAAAAGGATTATGGTTCAAGACTGCGCGAAACCAAAGTCATTTTACATAAACTTGGAAGTGAAGATGGTTCGGCTGAGAAAGGGAAGAAGAAATGGTGGGGAAGAAGGAATAGTACAAAGATAAATTGA 3420 0.4047 MSETSTVSPVFQSIKSLPPKFKFTNNPSPGLVGKHVNGKLRSAVPIGSGSPGNSVLVVEDSNKVQGRAGGMDIFDEDSPYGGKSSSLEGRPLDADVPLPLPSNSTSSREYKWSDTTPYASKKFTIYVFQKLQSWFQLSNGNWELVKIITTSGTESVITLSDGKVSKVKDETLVPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKCKAIESPHVYAITDTAMREMMRDEVNQSIIISGESGAGKTETAKIAMQYLATLGGGSGIEYEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISEKLNLQSVDDYKYLNQSNCYSITGVNDAEEFRIVKEALDVVHISKEDQENVFAMLAAVLWLGNISFAVVDNENHVQAVEDEGLLSTAKLIGCDIEDLKLTLSTRKMKVGNDNIVQKLTLTQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQGCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGERDRAFTVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSSTCHLPQIFASHMLTQSEKPVVGALHKSGGADSQKLSVATKFKGQLFQLMQRLEITTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISKSGFPTRMSHQKFARRYGFLLLENVASQNPLSVSVAILHQFKILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILCVQSSFRGYRARCYRKELSGGITTLQSFIRGERSRKGYVALLQRYRAAVVIQKWIKMVFSRIRLKAANDAVVVIQSFIRGSLVRKCSGDIRLLKSGGLKTSESGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASEEREYSWDMESNHRRQESNGGRSMSAGLSVISRMAEEFEQRSQVFGDDAKFLVEVKSGQIEASLSPDRELRRLKQMFEAWKKDYGSRLRETKVILHKLGSEDGSAEKGKKKWWGRRNSTKIN 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0259 1139 ProSiteProfiles IQ motif profile. 818 845 IPR000048 GO:0005515
Lal13g0259 1139 SMART iq_5 815 837 IPR000048 GO:0005515
Lal13g0259 1139 SMART iq_5 887 909 IPR000048 GO:0005515
Lal13g0259 1139 SMART iq_5 864 886 IPR000048 GO:0005515
Lal13g0259 1139 SMART iq_5 838 860 IPR000048 GO:0005515
Lal13g0259 1139 Gene3D - 748 859 - -
Lal13g0259 1139 MobiDBLite consensus disorder prediction 1001 1034 - -
Lal13g0259 1139 SMART MYSc_2a 175 815 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 Pfam Myosin head (motor domain) 341 802 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 ProSiteProfiles IQ motif profile. 888 917 IPR000048 GO:0005515
Lal13g0259 1139 Gene3D Kinesin motor domain 147 338 IPR036961 -
Lal13g0259 1139 PRINTS Myosin heavy chain signature 211 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 PRINTS Myosin heavy chain signature 265 290 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 PRINTS Myosin heavy chain signature 307 334 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 PRINTS Myosin heavy chain signature 553 581 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 CDD MYSc_Myo8 195 802 IPR036022 -
Lal13g0259 1139 Coils Coil 934 982 - -
Lal13g0259 1139 Gene3D Kinesin motor domain 672 747 IPR036961 -
Lal13g0259 1139 MobiDBLite consensus disorder prediction 68 96 - -
Lal13g0259 1139 Gene3D Myosin VI head, motor domain, U50 subdomain 385 515 - -
Lal13g0259 1139 Gene3D - 516 659 - -
Lal13g0259 1139 MobiDBLite consensus disorder prediction 1001 1041 - -
Lal13g0259 1139 Pfam IQ calmodulin-binding motif 820 835 IPR000048 GO:0005515
Lal13g0259 1139 Pfam IQ calmodulin-binding motif 890 906 IPR000048 GO:0005515
Lal13g0259 1139 ProSiteProfiles Myosin motor domain profile. 181 814 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 863 IPR027417 -
Lal13g0259 1139 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 341 - -
Lal13g0259 1139 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 342 1139 - -
Lal13g0259 1139 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 128 177 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lal13g0259 1139 ProSiteProfiles IQ motif profile. 839 868 IPR000048 GO:0005515
Lal13g0259 1139 Gene3D - 339 380 - -
Lal13g0259 1139 MobiDBLite consensus disorder prediction 1119 1139 - -
Lal13g0259 1139 PANTHER MYOSIN 9 341 - -
Lal13g0259 1139 PANTHER MYOSIN 342 1139 - -
Lal13g0259 1139 Gene3D - 864 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0259 Lal-Chr13 1623300 1634431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0259 7 1137 Myosins gene family AT1G50360 71.550 0.0 1681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0259 - K10357 gmx:100801124 1912.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0259 13 1623300 1634431 Lal13g0259 13 1623300 1634431 ECH