Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0250 ATGCAGGATAACAACGAGAGCAGCGGCAGCGGATTTCACCACCATACCACGGCGGCGCAATCCCGCCAACACCGCCACAAACTAGAAGTTTACAATGAGATTCTCCGCCGTCTCAAGGATTCCGGCAACGACGAAGCTATGCAACCTGGCTTCGATGATCAGCTTTGGGCTCACTTCAACCGTCTCCCTACACGGTATGCGCTGGATGTGAATGTGGAAAGGGCTGCAGATGTTCTTATGCACAAAAGATTACTGCATTTGGCTCATGATCCTGCTAATAGGCCTGCAATTGAAGTTCGATTAGTCCAGGTTCATCCCATATCGGATGGAAATTCAGCTGACTCTGTCGTATCAGATGTTCCTGGGAAAGAATCTGGTCAAAGCTCTTCAAAGTTCTCACACAGACCGGGTTTACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTAGCACTTGAAGCAAATAATTCAGATGACATAGAGGAGGAACAATCTGTGAATACTAGTGCACAATATTCACGGCCCATGCATGAAATTACCTTCTCAACAGATGACAAGCCAAAGCTTCTTAGCCAGTTAACTGCTTTGCTTGCTGAAATTGGACTGAACATCCAAGAGGCGCATGCCTTCTCCACAACCGATGGTTACTCATTAGATGTATTTGTTGTTGAAGGATGGCCCTATGAGATTGTAAAAGGTTTAGTTGATAGGGGACTACATGACAACTTGGTATTAAAACAGGAAACAGAGAAGCTTAAAGCAACTTTGGGAAGAGAAGTATTAGTGATTGAGCGGCAGGCATGGTCGGGTCAGCAATCAGAATCTTCTGTTGAGAAGCCTGATCAAGCAGAGGTGAAATGTGAACCTGATCAGTTGACAATACCTAATGATGGGATGGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCGTCTGGGTCATATGGTGAACTCCAAGAAGTAGCCATTAAAGTTCTCAAGGCTGAGCATGTAAATTCAGATCTGCAGACAGAGTTCGCGCAGGAAGTGTATATCATGAGAAAGGTTCGACACAAGAATGTCGTACAATTCATAGGAGCATGTACAAAGCCCCCACGATTATGCATAGTTACAGAATTTATGTCCGGTGGAAGCGTGTACGACTATCTACATAAGCAGAAGGGTTGCTTTAAATTTCCTACACTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAATTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGGTGCCAATCTTTTGATGGATGAAAATGGTGTTGTAAAGGTTGCTGACTTTGGGGTAGCTAGAGTGAAAGCTCAATCCGGAGTTATGACAGCAGAAACTGGAACATATCGATGGATGTCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAGTTGTTTTATGGGAATTGCTAACTGGAAAGCTTCCGTACGAATACCTGACCCCTCTACAGGCTGCTATAGGAGTGGTTCAAAAGGGTCTACGACCAACCATCCCCAAGAACACCCATCCAAAGTTTGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAGCATTGAGACCCGATTTCCCCGAGATTATCGAGATCCTGCAGCAGTTAGCCAAGGAGGTTGGAGATGAAGGAGAGGATCGGCGTAGGGATAAAGTAGGAGGAGGAGGATTTCTGTCTGTCCTGAGACGAGGTCATCACTAA 1764 0.445 MQDNNESSGSGFHHHTTAAQSRQHRHKLEVYNEILRRLKDSGNDEAMQPGFDDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLHLAHDPANRPAIEVRLVQVHPISDGNSADSVVSDVPGKESGQSSSKFSHRPGLHPPPAFGSSPNLEALALEANNSDDIEEEQSVNTSAQYSRPMHEITFSTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEIVKGLVDRGLHDNLVLKQETEKLKATLGREVLVIERQAWSGQQSESSVEKPDQAEVKCEPDQLTIPNDGMDVWEIDPKHLKYGTQIASGSYGELQEVAIKVLKAEHVNSDLQTEFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGCFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKGANLLMDENGVVKVADFGVARVKAQSGVMTAETGTYRWMSPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPALRPDFPEIIEILQQLAKEVGDEGEDRRRDKVGGGGFLSVLRRGHH 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0250 587 PRINTS Tyrosine kinase catalytic domain signature 379 392 IPR001245 GO:0004672|GO:0006468
Lal13g0250 587 PRINTS Tyrosine kinase catalytic domain signature 416 434 IPR001245 GO:0004672|GO:0006468
Lal13g0250 587 PRINTS Tyrosine kinase catalytic domain signature 462 472 IPR001245 GO:0004672|GO:0006468
Lal13g0250 587 PRINTS Tyrosine kinase catalytic domain signature 481 503 IPR001245 GO:0004672|GO:0006468
Lal13g0250 587 PRINTS Tyrosine kinase catalytic domain signature 525 547 IPR001245 GO:0004672|GO:0006468
Lal13g0250 587 ProSiteProfiles Protein kinase domain profile. 312 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0250 587 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 568 - -
Lal13g0250 587 SUPERFAMILY ACT-like 179 228 IPR045865 -
Lal13g0250 587 MobiDBLite consensus disorder prediction 1 17 - -
Lal13g0250 587 MobiDBLite consensus disorder prediction 108 148 - -
Lal13g0250 587 CDD STKc_MAP3K-like 318 554 - -
Lal13g0250 587 ProSiteProfiles ACT domain profile. 181 271 IPR002912 -
Lal13g0250 587 MobiDBLite consensus disorder prediction 1 25 - -
Lal13g0250 587 Gene3D Transferase(Phosphotransferase) domain 1 384 572 - -
Lal13g0250 587 SMART serkin_6 312 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0250 587 SUPERFAMILY Protein kinase-like (PK-like) 302 557 IPR011009 -
Lal13g0250 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Lal13g0250 587 Gene3D Phosphorylase Kinase; domain 1 301 383 - -
Lal13g0250 587 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 13 568 - -
Lal13g0250 587 Pfam Protein tyrosine and serine/threonine kinase 325 554 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0250 Lal-Chr13 1584361 1592106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0250 2 586 MAP Kinase Kinase Kinase AT4G35780 61.720 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal13g0250 PK_Tyr_Ser-Thr 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0250 - - gmx:100805180 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0250 13 1584361 1592106 Lal13g0250 13 1584361 1592106 ECH
Lal12g0280 12 1993122 2000126 Lal13g0250 13 1584361 1592106 LSH