Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0245 ATGGGTGTGCCTCAGAACAATGTGGATGTGGAGGATGGTAACTTGGAAATTGGAATGGAATACAGAACTGTATCCGGAGTTGCTGGACCATTGGTCATTCTTGATAAAGTTAAGGGACCTAAATATCAAGAAATTGTTAATATTCGTTTAGGAGATGGAAGTACTCGCCGTGGACAAGTTCTAGAGGTTGATGGCGAAAGGGCCGTTGTTCAGAAATTTATATGTGCGTGTAGCTGTAGTGACTTCAATAGCAAACAATTGCTAGTGTTCAGTTTTACCATTCTGCTGGCATCATTAACAGATGGTTACAAACTTAGAGTTTATTCACCTATTTCTACTATTGACCAGGTCTTTGAAGGTACTTCTGGGATTGACAATAAATTCACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTTTCTCTGGACATGCTTGGGCGCATATTTAATGGTTCCGGAAAACCAATTGACAATGGAAGTTCCATCAACCCTAGTGAGAGAACTTATCCTGAGGAAATGATACAGACGGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGACAAAAGATCCCTTTATTCTCAGCTGCTGGTCTCCCCCATAATGAGATTGCGGCACAGATATGTCGTCAGGCTGGCTTAGTGAAGCGGTTGGAGAAATCTGATAATCTTCTGGAGGGTGGCGAAGGAGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTTAAACGTGACTTTGAGGAGAATGGCTCAATGGAGAGAGTGACCCTTTTTCTTAATCTGGCTAATGATCCTACAATTGAGCGTATCATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAACATGTTCTTGTGATCCTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTGTCTGCTGCTCGAGAAGAAGTACCCGGAAGACGTGGTTATCCTGGTTACATGTACACAGATCTTGCAACAATTTATGAACGTGCGGGAAGAATTGAAGGGAGAACTGGTTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGATATTACACATCCAACTCCTGATCTTACAGGATATATCACTGAGGGTCAGATATACATTGACAGGCAGCTGCACAATAGACAGATATACCCACCAATTAACGTCCTTCCATCTCTATCTCGGTTGATGAAGAGTGCTATCGGAGAGGGAATGACTAGAAAGGATCACGCAGATGTGTCCAACCAGTTGTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACTTGTTGTATCTGGAGTTTTTGGACAAGTTTGAAAGGAAATTTGTCGCCCAGGGAGCTTATGACACCCGCAATATCTTCCAGTCTCTAGATCTTGCATGGACTTTGCTTCGAATTTTCCCTCGTGAGCTTCTTCATCGTATACCAGCCAAGACTCTTGACGCGTATTACAGCCGAGATGCCGGTAACTGA 1563 0.4255 MGVPQNNVDVEDGNLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGERAVVQKFICACSCSDFNSKQLLVFSFTILLASLTDGYKLRVYSPISTIDQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEGGEGDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRTGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAYYSRDAGN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0245 520 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 179 409 IPR000194 GO:0005524
Lal13g0245 520 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 113 520 - -
Lal13g0245 520 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 3 77 - -
Lal13g0245 520 Gene3D - 16 87 - -
Lal13g0245 520 Hamap V-type ATP synthase beta chain [atpB]. 18 518 IPR022879 -
Lal13g0245 520 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 113 520 IPR022879 -
Lal13g0245 520 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 3 77 IPR022879 -
Lal13g0245 520 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 113 518 IPR005723 GO:0033180|GO:0046961|GO:1902600
Lal13g0245 520 PIRSF V-ATPsynth_beta/V-ATPase_B 11 113 IPR022879 -
Lal13g0245 520 PIRSF V-ATPsynth_beta/V-ATPase_B 101 520 IPR022879 -
Lal13g0245 520 CDD V_A-ATPase_B 137 411 - -
Lal13g0245 520 ProSitePatterns ATP synthase alpha and beta subunits signature. 400 409 IPR020003 GO:0005524
Lal13g0245 520 CDD ATP-synt_V_A-type_beta_C 419 513 - -
Lal13g0245 520 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 71 IPR004100 GO:0046034|GO:1902600
Lal13g0245 520 CDD ATP-synt_V_A-type_beta_N 20 136 - -
Lal13g0245 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 415 IPR027417 -
Lal13g0245 520 Gene3D - 100 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0245 Lal-Chr13 1546725 1552303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0245 1 520 Primary Pumps ATPases(2) AT4G38510 84.991 0.0 900
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0245 K02147 - pop:7474990 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0245 13 1546725 1552303 Lal13g0245 13 1546725 1552303 ECH
Lal12g0271 12 1940520 1946174 Lal13g0245 13 1546725 1552303 LSH
Lal13g0245 13 1546725 1552303 Lal24g0204 24 1492336 1498792 LSH