Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0244 ATGAACTTTTTGAGGGCCTGCTTTCAGCCAAGTTCGGAGGGAGACACACACACGGGTTCAGAGGCTGGAGGTAGACAAGATGGGCTGTTGTGGTACAACGACTCGGGACAGCACTTTCATGGTGAATTTTCAATGGCTGTGGTCCAAGCCAATAACTTGCTTGAGGATCAGAGTCAGGTTGAATCTGGCACTTTGAGTTCCAATGAATTTGGCCCTTATGGTACCTTTGTTGGTGTCTATGATGGGCATGGAGGGCCTGAGACATCACGGTTTATCAATGATCACATATTTCACCATCTCAATAGATTTACTTCGGAACAACAATCAATGTCAGTGGATGTAATTCGCAAGGCATTTGAAGCAACAGAAGATGGATTTATGTCACTCGTTGCCAGACAATGGCCAATGAAGCCACAAATTGCAGCTGTTGGATCATGCTGTCTTGTTGGTGTTATTTGTAATGGTACCCTTTATGTAGCAAATGCTGGTGATTCCCGGGCTGTTTTGGGAAGAGTAATCAAGGCAACTGGTGAGGTTTTAGCCATGCAATTATCAACAGAGCACAATGCATCAATAGAATCTGTAAGACAGGAGCTGCATTCTTTGCACCCTGATGATTCAAATATTGTTGTTTTAAAGCATAGCGTATGGCGTGTGAAAGGCATTATTCAAGTTTCTAGATCTATTGGTGATGCATACTTGAAAAGGGCTGAATTCAATAGAAAACCACTTTATGCCGACTTCATACTTCATGAGCCGTTCAAGATGCCAATACTGAGCTCAGAACCATCAATAACAGTGCATCAGTTGCAGCCACATGATCGGTTTATTATATTAGCATCTGATGGACTCTGGGAGCACCTCAGCAATCAAGAAGCAGTTGATATAGTTGCAAATAATCCCCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGTTGCACTCCAAGAAGCAGCAAAAAAGAGAGAAATGAGATACTCAGACTTACAGAAAATTGATCGTGGAGTTCGTCGACATTTCCATGACGACATCAGTGTGATTGTTGTGTATCTTGACTCAAATCTCATGAGTAGAACAAGTGCTGTCAAATTCCCTAGTATTTCTGTTAGAGGGGGTGGTATTCACCTCCCTCCTTAA 1134 0.4295 MNFLRACFQPSSEGDTHTGSEAGGRQDGLLWYNDSGQHFHGEFSMAVVQANNLLEDQSQVESGTLSSNEFGPYGTFVGVYDGHGGPETSRFINDHIFHHLNRFTSEQQSMSVDVIRKAFEATEDGFMSLVARQWPMKPQIAAVGSCCLVGVICNGTLYVANAGDSRAVLGRVIKATGEVLAMQLSTEHNASIESVRQELHSLHPDDSNIVVLKHSVWRVKGIIQVSRSIGDAYLKRAEFNRKPLYADFILHEPFKMPILSSEPSITVHQLQPHDRFIILASDGLWEHLSNQEAVDIVANNPHSGSARRLVKVALQEAAKKREMRYSDLQKIDRGVRRHFHDDISVIVVYLDSNLMSRTSAVKFPSISVRGGGIHLPP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0244 377 Pfam Protein phosphatase 2C 75 318 IPR001932 -
Lal13g0244 377 CDD PP2Cc 43 350 IPR001932 -
Lal13g0244 377 SUPERFAMILY PP2C-like 51 351 IPR036457 -
Lal13g0244 377 Gene3D - 32 360 IPR036457 -
Lal13g0244 377 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 2 376 - -
Lal13g0244 377 SMART PP2C_4 34 348 IPR001932 -
Lal13g0244 377 ProSiteProfiles PPM-type phosphatase domain profile. 39 350 IPR001932 -
Lal13g0244 377 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Lal13g0244 377 PANTHER ALPHABET, ISOFORM E-RELATED 2 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0244 Lal-Chr13 1538677 1543004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0244 1 376 PP2C-type Phosphatase Gene Family AT4G38520 73.138 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0244 - K01102 gmx:100790374 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0244 13 1538677 1543004 Lal13g0244 13 1538677 1543004 ECH
Lal12g0270 12 1934135 1939499 Lal13g0244 13 1538677 1543004 LSH