Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0237 AACATGAACATGATCATGCAAAACATAACTGAGAGAGTAAGACCCCTTGTGGGTCTTAATGGATGGGACTATTGTGTATACTGGAAATTGAGTGAAGACCAAAGATATGTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAACAATAATCAAAATGATGATGAGGAACAACACCTTTTCCCTTTCTCTTCAGTGGCTTCTTCATGCAGGGATACTATCTTTCCACACCCTACAATCAAAACATGTCATCTTCTTTCCCAACTTCCCATTTCCATACCCTTGGATTCTGGGATTCATGCACAGACCCTATTGACAAACCAACCCAATTGGGTGAATTATTCCAAAAGCTTGGATTCAAACATTTTGGAAGAAACAATTGGGACCAAGGTTCTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTGGCTAAACAAGTGCCTGAAGATCTTCAAGTAATAGATTTCATTACAACACAGTGCATTGTATTGGTGGAGCAGGAAACAGTGAACAACCATTCAATGAGCTTCAACATTGATGTAAACTCAATAAGCAACAACAACAACAACATGCAATCAAATCATCAACTTGTAAGCGATGAAAATGAAGGCAATAACAATCACAGGAACAACAATCACTCTTTCCCTCTCACAACAACAGCATCACCAGACACTTCAAGTCTCCCACATGACATATCTCTAGACCGCATAGGTTTATGCAATTCTTCCCTCAACTTCATGCACCACCACCAATTCAATTACAATAACCAAGGTTCCTTCCTTCATGACAATAACCAAACCAATAATAATGATGAATGCATGAATATGAATGACCATGCACAAGACATGCAACAATATTTTGAACCTTTGGACACAAAGGATCATAAGCAAGGCCAAAAAGGATCAGATTCAATGTCAGATTGTAGTGACCAGAATGAAGAAGAGGACGATGGGAAATATAGGAGGAGGAATGGGAAAGGGAACCAATCCAAGAACCTTGTAGCTGAGAGGAAGAGAAGGAAGAAATTGAATGATAGGTTGTATAACCTTCGTTCTTTGGTGCCAAGAATCTCTAAGCTAGATAGGGCTTCAATTCTTGGTGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGACCTGCAAGATGAGCTTGAGGAAAATTCAGACACTGGAGATGACAGCAACTGCTTCAATAACAATAATCATATGGTGGGTGTGAAAGAAGCAGATATTGTTAATGGAGCTGAAATTGGACCCAAAGAATCTGAACATTGTAAGACCCAAAATGGGTTTCATGTGGGGACTTCAGGGAATGGCTATATCACAAAGCAAAAGCAGGAAGTAGATGCTTCTACTATTGACAAGCAGACTCAGCAGATGGAGCCGCAGGTAGAAGTGGCTCATATAGATGGGAATGAGTACTTTGTGAAGGTGTTCTCCGAGCACAAGATGGGTGGATTTGTGAAATTGATGGAGGCTTTGAACACTCTCGGAATGGATGTAGTACATGCTACGGTCACCAGCCACAAAGGCCTAGTCTCTAATGTTTTTAAAGTGGAGAAAAAGGACAGTGAAATGGTTGAGGCTGAAGATGTGAGAGAGTCACTCTTAGAACTTACACGGAACCCATGTAAAGGATGGAATCATGAGATGACAGCAACATCAGAAAATGGTGTGGGAAGGGATCAACATCACCTCCACAACAATCAGATTGGTGCTTATCACCACCATCATTATCATACTTGA 1758 0.4107 NMNMIMQNITERVRPLVGLNGWDYCVYWKLSEDQRYVEWLGCCCAGTENNNQNDDEEQHLFPFSSVASSCRDTIFPHPTIKTCHLLSQLPISIPLDSGIHAQTLLTNQPNWVNYSKSLDSNILEETIGTKVLIPVPGGLVELFVAKQVPEDLQVIDFITTQCIVLVEQETVNNHSMSFNIDVNSISNNNNNMQSNHQLVSDENEGNNNHRNNNHSFPLTTTASPDTSSLPHDISLDRIGLCNSSLNFMHHHQFNYNNQGSFLHDNNQTNNNDECMNMNDHAQDMQQYFEPLDTKDHKQGQKGSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKDLQDELEENSDTGDDSNCFNNNNHMVGVKEADIVNGAEIGPKESEHCKTQNGFHVGTSGNGYITKQKQEVDASTIDKQTQQMEPQVEVAHIDGNEYFVKVFSEHKMGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSEMVEAEDVRESLLELTRNPCKGWNHEMTATSENGVGRDQHHLHNNQIGAYHHHHYHT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0237 585 Pfam Helix-loop-helix DNA-binding domain 335 378 IPR011598 GO:0046983
Lal13g0237 585 CDD ACT_UUR-ACR-like 480 543 - -
Lal13g0237 585 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Lal13g0237 585 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 390 IPR036638 GO:0046983
Lal13g0237 585 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 159 IPR025610 -
Lal13g0237 585 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 94 553 - -
Lal13g0237 585 SMART finulus 334 383 IPR011598 GO:0046983
Lal13g0237 585 MobiDBLite consensus disorder prediction 293 340 - -
Lal13g0237 585 Gene3D - 317 393 IPR036638 GO:0046983
Lal13g0237 585 Coils Coil 367 394 - -
Lal13g0237 585 MobiDBLite consensus disorder prediction 189 228 - -
Lal13g0237 585 CDD bHLH_AtAMS_like 331 400 - -
Lal13g0237 585 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 94 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0237 Lal-Chr13 1506269 1509697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0237 6 558 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 43.932 3.21e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal13g0237 bHLH-MYC_N 5.1e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0237 - - lang:109339468 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0237 13 1506269 1509697 Lal13g0237 13 1506269 1509697 ECH