Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0226 ATGGCGGCATCATCTTCATCAGCATCGCTCTTTGGATTTAGAGAAGAGGAACAGAATCAGAATCAGAATCAGATGAATCAACAACAACATTCATCTTCAGCAACTCCAGCTGCACTACCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAGTCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGAGTACAAAAGAGCCAAGGAGAAAGGTTTATCTGTGCCCTGAGCCCACTTGCGTCCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAGCATGGTGAAAAGAAGTGGAAGTGTGAAAAATGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAATACAGATGTGATTGTGGTACTCTCTTCTCCAGAAGGGACAGTTTCATCACTCACAGGGCCTTCTGTGATGCATTAGCTCAAGAGAGTGCAAGACAGCCACCAAACTTGATTAGCAGTGCCAATATTGGTAGCACCAGCAACCTTTATGGAACTAATAGTAGCAACATGGCCTTAGCCTTTCCTCATGTGGCTACTCAAATGTCTAACATTCAAGACCAAATCAATAACAACCATTCTACTGATATATTGGGTCTTGGTGGTAATCCTGGTCGGAATGGACAATTTGACAATTTCCTCCATCCATCTTTACAAGCCGGTTTATCATCCTTTAAGCCTTCACAGCAAACTATGCATCACTCTCCAGCTTCATTCTTCATGGCTTCGGATAATTCCAACCAAAACTATCACCACCTTGACCAGTCTCAACAACAACAACAACAAGGATTGGTGCAACAGAACAAAGTTCCATTCCAGGGGCTCATACATTTGTCTCATGATGGTCTTAACAATCATCACAATAATTCTCCATCACCTGGGGGATCAGCAAACCTGTTTAGCCATCCCTTCCTTTCTAGTAACACCAGCACTAATAGCAGCAACAACTCTTTCTCAGAACATTTCAACAGTGCAAATGGAACTGTTATGGGAGGCAATGAAGCAACCAACTTCTTCACTACAGGTAATGCTATAATGGGTGGTGGTCATCATCAACAAACAATAACTTCAAGTGCACCATCTCTATTCAGCACATCTCTCCAAAGCAACACTAGTGCTGCCAATACTCATCACATGTCTGCAACTGCATTGCTTCAGAAAGTTGCTCAAATGAGTGCAATTTCAAACAACAACACCACCTCACTTCTAAAAAGCTTCGGAAGCAGCACTTCCTCTAGCAGCGGATCCAAAGCTGATCAGCATAGGCCAATCCATGTTCCTGCTCTTCCTCCTCCTGCTGCAAACTATAGCAGCATCTTCGGTGGAAATGAAAACAGCAATAATAATAATCTGCAAGACCTGATGAACTCTTTTGCAGCTGGTGGAAACTCTACTATTTTTGAACATGGTAGTACAGTAGGGTTTACTGGGTTTGAACCATATGATCATAACTCAAACAGAAGTAGGGAACAACCAAAACTGCATGGAGTGAAATTTGGAACGGGCTCAGATGATAGGCTTACTCGTGATTTTCTTGGGGTTGGTCGAACAGTGACAAGCATGAGTGGTGGAAGTGGAAGGATTGTTTCACAAAGGGAGCAACATGGACATGGTGGTGGCTTCAACTTAAGCAATACTTTGGAGGCAGAAACGAATAATGATGCTGTGCCGTCAAGACAAGCTTTTGGAGGGAATTTTTTCAGTGAGTAA 1884 0.4331 MAASSSSASLFGFREEEQNQNQNQMNQQQHSSSATPAALPQKKKRNQPGTPSPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLISSANIGSTSNLYGTNSSNMALAFPHVATQMSNIQDQINNNHSTDILGLGGNPGRNGQFDNFLHPSLQAGLSSFKPSQQTMHHSPASFFMASDNSNQNYHHLDQSQQQQQQGLVQQNKVPFQGLIHLSHDGLNNHHNNSPSPGGSANLFSHPFLSSNTSTNSSNNSFSEHFNSANGTVMGGNEATNFFTTGNAIMGGGHHQQTITSSAPSLFSTSLQSNTSAANTHHMSATALLQKVAQMSAISNNNTTSLLKSFGSSTSSSSGSKADQHRPIHVPALPPPAANYSSIFGGNENSNNNNLQDLMNSFAAGGNSTIFEHGSTVGFTGFEPYDHNSNRSREQPKLHGVKFGTGSDDRLTRDFLGVGRTVTSMSGGSGRIVSQREQHGHGGGFNLSNTLEAETNNDAVPSRQAFGGNFFSE 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0226 627 MobiDBLite consensus disorder prediction 463 477 - -
Lal13g0226 627 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Lal13g0226 627 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lal13g0226 627 MobiDBLite consensus disorder prediction 300 323 - -
Lal13g0226 627 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Lal13g0226 627 Gene3D Classic Zinc Finger 125 204 - -
Lal13g0226 627 MobiDBLite consensus disorder prediction 1 48 - -
Lal13g0226 627 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 583 - -
Lal13g0226 627 MobiDBLite consensus disorder prediction 1 56 - -
Lal13g0226 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lal13g0226 627 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 583 - -
Lal13g0226 627 MobiDBLite consensus disorder prediction 463 488 - -
Lal13g0226 627 Gene3D Classic Zinc Finger 52 118 - -
Lal13g0226 627 MobiDBLite consensus disorder prediction 580 602 - -
Lal13g0226 627 SMART c2h2final6 147 167 IPR013087 -
Lal13g0226 627 SMART c2h2final6 112 142 IPR013087 -
Lal13g0226 627 SMART c2h2final6 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0226 Lal-Chr13 1431987 1438100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0226 42 204 IDZ Gene Family AT5G66730 87.117 1.18e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g0226 zf-C2H2_jaz 3.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0226 K25870 - gmx:100799389 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0258 12 1833512 1840772 Lal13g0226 13 1431987 1438100 LSH
Lal13g0226 13 1431987 1438100 Lal24g0195 24 1402306 1406816 LSH