Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0221 ATGAGTAGACGTTCCAGCAGAACTATCTACGTTGGGAATCTACCCGGTGATATTCGTGAAAGAGAAGTCGAAGATCTGTTTATTAAGTATGGACACATAGCTCACATTGACCTGAAGGTTCCACCAAGGCCCCCTGGTTATGCATTTGTGGAGTTTGAAGATTCTCAAGATGCTGAAGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGATTACGGGTAGAGCTTGCACATGGTGGGCGTGGTAATTCATCTTCAAGAGGAGACCGATATAATAGTCGCAGCAATGGACGAGGTGATGGCGGACGTGGGGGTGGGATATCTAAGCGCTCTGATTACCGTGTTCTTGTCACAGGGTTGCCCTCTTCAGCTTCCTGGCAGGATCTTAAAGATCACATGCGAAAGGCAGGGGATGTTTGCTTCTCCCAAGTTTTTCGAGATGGAAGAGGTACAACTGGTATTGTGGATTACACCAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCAAGAATGCATTTTCCAGGGGTTATGTTCATGTGAGAGAATATGATTCAAGGAAGGACTCTAGAAGTCCTAGTCGTGATCGATCTCATTCCAGAGGAAGAAGCTATAGTCGCAGTCGTAGCCGTAGTTACAGTCCAGGTCACAGCCGAAGTAAATCTCCAAAGGGAAAATCTTCACGCAGTAAATCCCCTAAGGGAAAATCTTCACGAAGTAAATCCCCAAAGGGCAAATCTTTGCGCCGTTCACCAGCTAAATCTCCTTCACGATCTGCTTCTCGTTCTCGATCAAGATCAAGGTCCCGCTCTTTATCAGGATCGCGATCAAGATCAAGGTCTCCTTTGCCTTTGCGTAACAAGAGTCCAAAAAGACGCAGTGCTAGCAGAAGCCCAAGTAAGAGCCCAAAAAGACGCAGTGCTAGCAGAAGCCCAAGTAAGAGCCCAAAAAGACGCAGTGCTAGCAGAAGCCCAAATAAGAGCCCAAAAAGACGCAGTGCTAGCAGAAGCCCGAGTAAGGGTTAG 1050 0.4676 MSRRSSRTIYVGNLPGDIREREVEDLFIKYGHIAHIDLKVPPRPPGYAFVEFEDSQDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSRGDRYNSRSNGRGDGGRGGGISKRSDYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFRDGRGTTGIVDYTNYDDMKYAIKKLDDSEFKNAFSRGYVHVREYDSRKDSRSPSRDRSHSRGRSYSRSRSRSYSPGHSRSKSPKGKSSRSKSPKGKSSRSKSPKGKSLRRSPAKSPSRSASRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKRRSASRSPSKSPKRRSASRSPSKSPKRRSASRSPNKSPKRRSASRSPSKG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0221 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Lal13g0221 349 SUPERFAMILY RNA-binding domain, RBD 5 181 IPR035979 GO:0003676
Lal13g0221 349 CDD RRM1_SF2_plant_like 8 79 - -
Lal13g0221 349 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Lal13g0221 349 MobiDBLite consensus disorder prediction 230 256 - -
Lal13g0221 349 MobiDBLite consensus disorder prediction 215 229 - -
Lal13g0221 349 CDD RRM2_SF2_plant_like 116 191 - -
Lal13g0221 349 MobiDBLite consensus disorder prediction 192 349 - -
Lal13g0221 349 Gene3D - 2 114 IPR012677 -
Lal13g0221 349 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 287 - -
Lal13g0221 349 MobiDBLite consensus disorder prediction 192 211 - -
Lal13g0221 349 SMART rrm1_1 8 78 IPR000504 GO:0003723
Lal13g0221 349 SMART rrm1_1 117 188 IPR000504 GO:0003723
Lal13g0221 349 MobiDBLite consensus disorder prediction 79 111 - -
Lal13g0221 349 Gene3D - 115 192 IPR012677 -
Lal13g0221 349 PANTHER OS07G0673500 PROTEIN 2 287 - -
Lal13g0221 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Lal13g0221 349 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Lal13g0221 349 MobiDBLite consensus disorder prediction 293 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0221 Lal-Chr13 1405358 1409489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0221 9 174 Eukaryotic Initiation Factors Gene Family AT1G71770 24.561 5.27e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0221 K12890 - gmx:100789847 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0221 13 1405358 1409489 Lal13g0221 13 1405358 1409489 ECH