Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0218 ATGGTTGAAACCCGTCGAAGCTCCTCATCTTCAAAGCGTACTTTCTCTTCTCCTTCTTCTTCCACCGCCAAAAGATCCAAGGTTTCCGAAGATGCCTCACCATCAACTCTTCACGCTCCGGGAACTATTTCTCGCGCCAAAGATTCTGAAACCCGAATTGATTCCCGACAATCGGAGCTCCGGTCCGCTGATCTGCCTGATACGGCGTCGTTAAAGCCGGTGGATGATTGCGTTGAAGATAAGCCTCCTTTTAAGCCCGTTCAAGTCGAGGATTTGGTGTCCCCTCAGTATCCAGGTGAATCTGCGCCGGATGCGGATAAATCAAAGGCAGCTCGTACAGCGGCAGGTAGGTCCAAGAAACGGGTGACTAAATCCACAAAACCGGTCCCCAAGGCTGTGTGGGGAAATCTCCTTTCTCAGTGTTCTCAGAATCCTCACTTGTCCATGTTTGATCCTATCTTCACTGTTGGTCAAGGTCGTCAATGTAATTTATGGCTTAAAGATCCCTCTGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGTTCGTCTGTTGCATTACTGGAAATAACAGGGGGTAAAGGTGCTGTTCAAGTCAATGGTAAGACCCACCGGAAGAATGTCCGTCAAATTTTGAGTGGAGGTGATGAGGTGGTCTTCGGTTCTTCCGGCAAGCATGCTTATCCACTCATGAATAATATTACTACTACTGGCATACCTTCATCCATGAGTAACTTTGAAGCCAAGGGAGCTCCAGTAGATGGAATAAAATTTGTGGCTAGATCTGGGGACTCTTCAGCTGTTGCTGGCGCATCAATATTGGCCACATTATCTGATCTACATAATGATTTATCTCTCCTTTCACCAGCTGCTACAACTGGCAAGAATGTCCAGCAGAATACTGGCAGTTCATCACCTTCTGGCCACGGGGATGATATCCCGGACAATGAAATGAAGGCTACCACCAGCAGTGATGAACCACCTAGAGGTGTTTCTGCTGAGAAAACTGTTCTTGCATCCTCTAATTCTGTTAATGAAAATCCCAGACTAGACACCATGGAAGTCGATGCCAATGTGGATGCAGATGCTGGGAAGATCACTGCTTCTTCCGAGTTGAGGTCATTATTGCGGATGCTTTCTGGTTCCTGTCCTGAACTTGATTTAAGCAGTAGCGTTTCCAAGATATTAAAAGAACGGTGGGAATTAAGAAAATTCCTTAAAGATGTTGATACTCCAACAATATTAGCATCAACCAAGCACCAAGCATTCAACGACAGTTTACAACAAAGAATTCTCACTGCTGACAATATTGATGTTTCATTTGAAAATTTTCCTTATTATCTAAGTGATACAACAAAGAATGTTTTGACCGCCTCTACATATATTCATTTGAAGTGCGATGGCTTTGGAAAATATGCTTCAGACCTCCCATCGGTGTCCCCACAGATATTGTTATCCGGTCCTGCAGGTACGGAAATATATCAAGAGACTTTGTGCAAGGCACTTGCTAAGCATTTTGGCGCCAAAATATTAATTGTGGATGCTCTTTCCATACCCGATGCAGCACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAGGCCTCAAAGACCATCTGTGTTTGCTAAGAGAAGTATCCAGGTCGCCAAGTTACTGCAGAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTATTGGTGGATCTACATTAAGTTCTCAGGCTACTCTTAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCAGTACTCTTAAGACAGGTGATCGAGTAAAATTTGTTGGTAACTTCCCTTCTGATGTCTCATCGCTACAGAGTAATCCTTCAAGGGGACCAAGCTATGGTTCCCGGGGTAAAGTTCTCCTTGCTTTTGAAGATAACGAGTCTTCAAAAATTGGAGTTAGGTTTGACAAAACAATTCAACATGGTAATGATCTTGGAGGCCTTTGCGAAGATGATCGTGGATTCTTTTGTTCTGCAAATCATTTACTACAAGTAGATGGTACCACAGGGGATGACATTGACAAGCTTGCAATTAATGACCTTTTTGAGAGTAAAAGTGGTGCTCTAGTGTTTTTCATTAAGGATATAGAGAAGTCAATGGTTGGTAACTCTGAAATTTTGAAAAGTAAATTTGAAAACTTGCCACAGAATGTTGTTGTAATTGGCTCACATACCCAGCTGGACAACCGTAAGGAAAAGACTCAACCGGGTGGCCTTCTATTTACAAAGTTTGGGAGCAATCAGACCGCACTACTCGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAACAACTTAATCGCCTTTTCCCAAACAGGGTGACAATACAACTGCCTCAGGATGAGGCTCTACTTTCTGATTGGAAGCAGCAACTAGAACGCGACATTGAGACTATGAAAGCCCAGTCCAATGTTATCAGCATACGCTCAGTTCTCAACAAGATTGGATTGAATTGCTCTGACATCGAGTCACTTTGCATCAAGGATCAAACCCTAACATTCGAAAGTGTGGAGAAGATAATTGGCTGGGCTATAAGTTACCATTTTATGCAGTCATCTGAGTCTTCTAACAAAGACTCCAAGCTTGTGATATCTGCAGAAGGCATTAAGTATGGGCTAAATATTCTACAAGGCATTCAAAATGAAAACAAGAGCTCAAAAAAATCACTGAAGGATGTGGTAACTGAGAATGAATTTGAGAAAAAACTGCTCGGTGATGTTATTCCACCAAGTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAGAATGTGAAAGATACCTTGAAGGAATTGGTTATGCTTCCTCTTCAAAGACCTGAATTGTTTTTCAAAGGACAATTGACAAAGCCTTGCAAGGGAATATTGCTTTTTGGCCCACCTGGCACTGGAAAAACAATGCTTGCGAAGGCTGTAGCAACTGAGGCTGGAGCAAATTTTATAAATATTTCGATGTCCAGCATTACTTCTAAGTGGTTTGGTGAAGGGGAAAAATATGTTAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGACAGTATGCTAGGGAGACGTGAAAATCCTGGTGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACCAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACCGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGCAGATTGATGGTTAATTTGCCAGATGCTCCTAATAGAGAAAAAATTATGAGAGTCATTTTAGCTAAAGAAGATTTGGCACTAGATGTTGATTTGGAAGCAATAGCAAATATGACTGATGGATATTCGGGTAGTGACTTAAAGAATCTGTGTGTTACAGCAGCACACTGCCCAATAAGAGAGATTTTAGAGAAGGAAAAGAAGGAGAGAAATTCAGCATTGGCTGAGAACAAACCTTTACCTGTATTGTGTAGCAGTGCTGACATTCGTCCCTTGAAGATGGAAGATTTTAGATATGCACATGAGCAGGTTTGTGCCAGCGTGTCAACCGAATCATCAAATATGAATGAGCTACTCCAATGGAATGACCTTTACGGAGAAGGTGGATCAAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3726 0.4216 MVETRRSSSSSKRTFSSPSSSTAKRSKVSEDASPSTLHAPGTISRAKDSETRIDSRQSELRSADLPDTASLKPVDDCVEDKPPFKPVQVEDLVSPQYPGESAPDADKSKAARTAAGRSKKRVTKSTKPVPKAVWGNLLSQCSQNPHLSMFDPIFTVGQGRQCNLWLKDPSVGNVLCKLSHIERGGSSVALLEITGGKGAVQVNGKTHRKNVRQILSGGDEVVFGSSGKHAYPLMNNITTTGIPSSMSNFEAKGAPVDGIKFVARSGDSSAVAGASILATLSDLHNDLSLLSPAATTGKNVQQNTGSSSPSGHGDDIPDNEMKATTSSDEPPRGVSAEKTVLASSNSVNENPRLDTMEVDANVDADAGKITASSELRSLLRMLSGSCPELDLSSSVSKILKERWELRKFLKDVDTPTILASTKHQAFNDSLQQRILTADNIDVSFENFPYYLSDTTKNVLTASTYIHLKCDGFGKYASDLPSVSPQILLSGPAGTEIYQETLCKALAKHFGAKILIVDALSIPDAAPSKEVDSAKESSRPQRPSVFAKRSIQVAKLLQKKPASSVDAEIIGGSTLSSQATLKQEVSTASSKGSTLKTGDRVKFVGNFPSDVSSLQSNPSRGPSYGSRGKVLLAFEDNESSKIGVRFDKTIQHGNDLGGLCEDDRGFFCSANHLLQVDGTTGDDIDKLAINDLFESKSGALVFFIKDIEKSMVGNSEILKSKFENLPQNVVVIGSHTQLDNRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLNRLFPNRVTIQLPQDEALLSDWKQQLERDIETMKAQSNVISIRSVLNKIGLNCSDIESLCIKDQTLTFESVEKIIGWAISYHFMQSSESSNKDSKLVISAEGIKYGLNILQGIQNENKSSKKSLKDVVTENEFEKKLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFFKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKIMRVILAKEDLALDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERNSALAENKPLPVLCSSADIRPLKMEDFRYAHEQVCASVSTESSNMNELLQWNDLYGEGGSRKMRSLSYFM 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0218 1241 MobiDBLite consensus disorder prediction 294 313 - -
Lal13g0218 1241 SUPERFAMILY SMAD/FHA domain 142 226 IPR008984 GO:0005515
Lal13g0218 1241 MobiDBLite consensus disorder prediction 1 42 - -
Lal13g0218 1241 SMART AAA_5 973 1110 IPR003593 -
Lal13g0218 1241 Gene3D - 935 1214 IPR027417 -
Lal13g0218 1241 CDD AAA 975 1108 - -
Lal13g0218 1241 ProSitePatterns AAA-protein family signature. 1080 1099 IPR003960 GO:0005524|GO:0016887
Lal13g0218 1241 Gene3D - 119 232 - -
Lal13g0218 1241 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1241 - -
Lal13g0218 1241 MobiDBLite consensus disorder prediction 1 128 - -
Lal13g0218 1241 MobiDBLite consensus disorder prediction 45 61 - -
Lal13g0218 1241 CDD FHA 159 225 IPR000253 GO:0005515
Lal13g0218 1241 Gene3D - 1109 1203 - -
Lal13g0218 1241 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1241 - -
Lal13g0218 1241 MobiDBLite consensus disorder prediction 294 336 - -
Lal13g0218 1241 Pfam AAA+ lid domain 1130 1166 IPR041569 -
Lal13g0218 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1215 IPR027417 -
Lal13g0218 1241 Pfam ATPase family associated with various cellular activities (AAA) 977 1106 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0218 Lal-Chr13 1385046 1397047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0218 936 1188 Calmodulin-binding Proteins AT3G56690 38.846 5.39e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0218 - - gmx:100801477 1865.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0218 13 1385046 1397047 Lal13g0218 13 1385046 1397047 ECH