Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0214 ATGGGTGATAATAAAGGCAAAGTCTCTAACATAGAAGGCTTTAAGTACAACTTCACAGATGCAACAGCAAGTGAAACTTCTGCTTATCAATCTCAAGATGAAGGGGTCATTAAAGAGCAAGATCGATTGCTTCCAATAGCTAATGTTGGGAGGATCATGAAGCAAACCCTCCCTCCTAATGCCAAAGTGTCCAAAGAAGGTAAAGAAACCATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTTACAGGTGAAGCTTCTGACAAGTGTCACAGGGAGAAGCGCAAGACCGTGAATGGAGATGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGATTATGCTGAGCCACTGAAAAGGTATTTGGATAAGTTTAGGGAATTAGAAGGTGAGAAAGCTAATATATCAAAACACTAA 420 0.4095 MGDNKGKVSNIEGFKYNFTDATASETSAYQSQDEGVIKEQDRLLPIANVGRIMKQTLPPNAKVSKEGKETMQECVSEFISFVTGEASDKCHREKRKTVNGDDICWALATLGFDDYAEPLKRYLDKFRELEGEKANISKH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0214 139 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal13g0214 139 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Lal13g0214 139 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Lal13g0214 139 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lal13g0214 139 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Lal13g0214 139 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal13g0214 139 SUPERFAMILY Histone-fold 40 137 IPR009072 GO:0046982
Lal13g0214 139 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 20 137 - -
Lal13g0214 139 Gene3D Histone, subunit A 29 139 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0214 Lal-Chr13 1366349 1366768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0214 16 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.462 3.93e-61 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal13g0214 CBFD_NFYB_HMF 4.6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0214 K08065 - gmx:100817274 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0214 13 1366349 1366768 Lal13g0214 13 1366349 1366768 ECH