Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0199 ATGAAAGAAAAGTTGGATTCTCCTGTCACTGTTCTTGAGGACTATTTTAGGAGTTCAGATTCAGAAACAAGTTCTTGTAAAGACCCTACAGTGCATTCTGAGTCTCAAGACATTTCAAAACCTGCTTCTAAGTGGCATGCATTTTTTCAATCAATGAGAAGCAAATCAAAGAAACCTGTACCAACATTGCATCCTCTCAATGGCCTCAAACTTTCAAAAAGAATGAGTAGAAGCATGAGGGAGACCATATTGCCTAGTTGTCTCTTAGATGCAACTTTATCATCCCCTTGCAAGTCACCATGGAAGATCTTCAGAAATCATGATATATTACTTGCAACTAATCATTTCAGCCAAGAAAATTTGATTGGAAAGGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTACCAAATAATCAGGTAGTAGCAATTAAAAGACTAACAAGAGGATCAGGTGATGAAAAGATAGGTGATTTCTTATCAGAACTTGGTGTAATGGCACATGTCAATCATCCTAATACTGCTAAGCTAGTTGGATATGGTGTGGATGGTGGAATGCATCTAGTTCTCGAATTGTCTGAAAAAGGAAGCCTAGCTTCTGTGCTTTATGGTTCTAAGGAGAAACTACCATGGTTTATTAGGCAAAAAATTGCATTAGGAACAGCTAAGGGGATATTATATCTTCATGAGGGTTGTCAAAGAAGAATAATCCACAGAGATATTAAAGCTGCAAATATATTACTCACAGAGGACTATGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGTTGCCAGAGAATTGGACTCACCACACCGTTTCAAAATTTGAAGGAACCTTTGGCTACCTTGCACCTGAATACTTGCTTCATGGTATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTACTTCTATTAGAATTAGTCAGTGGAAGGCGAGCACTTGATTATTCACAACAAAGCCTTGTTTTATGGGCTAAACCGTTGTTGAAAAAGGATGATATTAAGGAACTGATTGATCCTTCTCTAGCAGATGAATTTGACTCTAGACAAATGAATCTTATGCTACTAGCAGCTTCTTTATGCATACAACAATCATCAATTCGTCGACCCTCTATGAGACAGGGGTTTCTTGATGATCAATTCACTCAACTTCAGAAACTGCAAGATGAAACCTCTCCTGATTTTGTAATTGAGGTTTTCACTATGTTCTTTGAAGATTCTGAGAATCTCATCAATAACATGAAACGAGCTCTAGAACAAACACCTGTAGATTTCAGACAAGTAGATGCTCATGTCCATCAATATAAGGGAAGCAGTGCCAGTGTTGGGGCTGCCAGAGTCAAAAATGTCTGCGCTACCTTCAGAAATTTCTGTGATGCTCAGAACCTGGAAGGGTGTGTGAGATGTCTGCAACAGTTGCAACATGAATATTCTCTGCTGAAGAGTAATCTTCAACACTTATTTGGGCTTCAGCAACAGATCCTGGCTGCTGGTGGTTCAACAATTGAGTAG 1518 0.388 MKEKLDSPVTVLEDYFRSSDSETSSCKDPTVHSESQDISKPASKWHAFFQSMRSKSKKPVPTLHPLNGLKLSKRMSRSMRETILPSCLLDATLSSPCKSPWKIFRNHDILLATNHFSQENLIGKGGYAEVYKGCLPNNQVVAIKRLTRGSGDEKIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMHLVLELSEKGSLASVLYGSKEKLPWFIRQKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDYEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKDDIKELIDPSLADEFDSRQMNLMLLAASLCIQQSSIRRPSMRQGFLDDQFTQLQKLQDETSPDFVIEVFTMFFEDSENLINNMKRALEQTPVDFRQVDAHVHQYKGSSASVGAARVKNVCATFRNFCDAQNLEGCVRCLQQLQHEYSLLKSNLQHLFGLQQQILAAGGSTIE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0199 505 Gene3D HPT domain 358 505 IPR036641 GO:0000160
Lal13g0199 505 Gene3D Transferase(Phosphotransferase) domain 1 193 342 - -
Lal13g0199 505 ProSiteProfiles Protein kinase domain profile. 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0199 505 PANTHER OS08G0249100 PROTEIN 1 393 - -
Lal13g0199 505 Pfam Hpt domain 400 483 IPR008207 GO:0000160
Lal13g0199 505 Pfam Protein kinase domain 117 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0199 505 CDD HPT 400 476 IPR008207 GO:0000160
Lal13g0199 505 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 394 496 IPR008207 GO:0000160
Lal13g0199 505 MobiDBLite consensus disorder prediction 18 39 - -
Lal13g0199 505 SUPERFAMILY Protein kinase-like (PK-like) 94 376 IPR011009 -
Lal13g0199 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Lal13g0199 505 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 393 - -
Lal13g0199 505 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 368 496 IPR036641 GO:0000160
Lal13g0199 505 SMART serkin_6 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g0199 505 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Lal13g0199 505 Gene3D Phosphorylase Kinase; domain 1 89 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0199 Lal-Chr13 1251729 1260840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0199 103 376 Trihelix Transcription Factor Family AT1G68690 41.754 3.41e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lal13g0199 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0199 - - lang:109353423 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0199 13 1251729 1260840 Lal13g0199 13 1251729 1260840 ECH
Lal13g0199 13 1251729 1260840 Lal13g0669 13 4338713 4345975 ECH
Lal13g0199 13 1251729 1260840 Lal13g0672 13 4354647 4357341 ECH
Lal14g1956 14 18684129 18687648 Lal13g0199 13 1251729 1260840 ECH
Lal13g0199 13 1251729 1260840 Lal12g0232 12 1639723 1642455 ECH
Lal12g0232 12 1639723 1642455 Lal13g0199 13 1251729 1260840 LSH