Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0197 ATGGCTGATTCCAGTGATGAAAACAAGCAGGATAATAACGGGAAATCAAGTCATTATTCTATAGTTCCTGATGATTCCTCTGAATCAGATTCAACAGAGGTAGGATCAGATCAGCATAGAGGAGAACGGGAATTGGATTGGAATGCTACTTATGCACGCAATGTTGAGGAATTACTGTTGTCTAAGTTGCGAGCAGTTTTTGAGGGTGCAATCAAGCAGATTGTTGAACTTGGCTATAGTGAAGACGTAGCTAAAATGGCCCTTTCAAGGAAGGCCCTATACATACAGGAAGGAGACCCTGTCTCAAATATTGTAAATGCTACATTGAATGTGTTGAAGGGAAAATATGTTACTACTTCAGACATTTCATTTGGAAATATTCAGCACTTGGTGTTTTACACCTTGTCGGAGATGATCGCAGACCTTCGTAAAGCCAGACCATCCCTAACAGCTGGTGAAGCATTGTGGTCTTTGCTGATGTGTGATTTGAATTTTTCATTGGCCTGTACATCGGAAGAATTCGAGAATGTTGATTCCAATGGGGAAAGCTTTACCAGCCCTTCCATTCCCCAAAATTCACCCAACAATGAAAGGGTAAAGTCTGAAGAAGAGAATGATTCATTGCCATCCGTTTCAGGTAGACCCTTTGAAACTTCGGGGGATGTATGTAAAGGAGGATCTTCTTCTGAGCGACACAATGTAAAAGAAATTAAATCACTTACGCAGATGTTTCACCATATGAAGAAAGCATATAGGGCCTGTGAAAAAGGGAGTTTGATGATTGACAAAAAAATCGAACCACCATCTGATATTCATAATCAACAAATGAAAAGTTTCTCTTCAAACACAAAAAGCAAGCAAGGAGTTTGTGCATCAGATGCAACGTGCTATCTTTCAACCAACACTGCATCTACTTTACCTGCAGGAGGTAGCTCTGCAACATTACCCGACGCAGTATTTCCATCTTCAATAGTGAATCCCAATATTTCAGCATCAGACACAATATCCAAACCAAAATCTCAGCGAAACCCATTTGATGCTCAGAAGATTCCAGATTACTGTGCTGGTATTCCTTATGATGAGTCTATGGGTAAGTATGTCCCAAGAGACCAGAATGATGAAGCTATTTTGGAGTTAGTTCGTCGAGCGCATTTATTGCAGGGTAAGCTGCAAAGGTGGATCAACTGGGCAAATCGAAAGATTACGCATGTTACTGTTAGGGCTGTCAAGCTGCAGCCTGAGCTTAAAATGCTAAAGAAGGAGAAGCAAGAAGCCGAAAAAGATGCAATACTTTTTCAGGAGAATGCTGTGAAGAAGATCTCTGAGATGGATAATGCCACAGAGAATACTAAAAAACAAATTGACAGTACTACTACTGATGCTCTCCTCCTAGAGGCAGAATACACAATGCTACATGAGGAGTTGGTTGCTGAAAGGCTGTCACTTGAGAAGTCAATGACAAGGCATCAGCAAGCAATCGAGAGAGAGCAGAGAGCTCTTACAAGGGCAGAGTTTTTGGAGAGCGAGAATGCTTTGCATCGTGATGATCTCGAGAGAGACAAGCAGAAGTTATCCAAATTGCAACAACAGCTTGACAAAGAGAAAATTCTTCTAACTAGGGTTGAGGGTAGAATGGAAAAAGAGAGATCAAACAAAGAAAAGCTGCTTGCACAGGCTGCATCTATCAGAAGGGAAAAGAAACGGCTAGCAGAACACACAAAAGCTGAGGAAGATAAGATCATAAAAAAGGCAGCCCATAACTTGCAGAAATGTGTAGACGTGATTGCAAAGCTTGAAACACAGTTGGAAGAAATAAAACGAAAATCAGAGTCTGAAACAATTGCAGCACTTCATAAAGGTGAGATGTCGGGGAGCAAGAAACCGAGTCCGTCTAAAACCATTGTGAGCGGCCAAACCAAACCTGCTGCTGGAAGTTTTAGGCGGGAGCATGAGTGTGTTATGTGCCTATCCGAGGAGATGTCAGTAGTTTTTCTTCCATGTGCTCATCAGGTTTTGTGTGCTGGATGCAATAGGATCCATGACAGACAAGGGGTGAAGGATTGCCCTTCATGTAGGACTCGGATCGAACACAGGCTTCATGTTAGATTTGCAGACAAGTAG 2121 0.4191 MADSSDENKQDNNGKSSHYSIVPDDSSESDSTEVGSDQHRGERELDWNATYARNVEELLLSKLRAVFEGAIKQIVELGYSEDVAKMALSRKALYIQEGDPVSNIVNATLNVLKGKYVTTSDISFGNIQHLVFYTLSEMIADLRKARPSLTAGEALWSLLMCDLNFSLACTSEEFENVDSNGESFTSPSIPQNSPNNERVKSEEENDSLPSVSGRPFETSGDVCKGGSSSERHNVKEIKSLTQMFHHMKKAYRACEKGSLMIDKKIEPPSDIHNQQMKSFSSNTKSKQGVCASDATCYLSTNTASTLPAGGSSATLPDAVFPSSIVNPNISASDTISKPKSQRNPFDAQKIPDYCAGIPYDESMGKYVPRDQNDEAILELVRRAHLLQGKLQRWINWANRKITHVTVRAVKLQPELKMLKKEKQEAEKDAILFQENAVKKISEMDNATENTKKQIDSTTTDALLLEAEYTMLHEELVAERLSLEKSMTRHQQAIEREQRALTRAEFLESENALHRDDLERDKQKLSKLQQQLDKEKILLTRVEGRMEKERSNKEKLLAQAASIRREKKRLAEHTKAEEDKIIKKAAHNLQKCVDVIAKLETQLEEIKRKSESETIAALHKGEMSGSKKPSPSKTIVSGQTKPAAGSFRREHECVMCLSEEMSVVFLPCAHQVLCAGCNRIHDRQGVKDCPSCRTRIEHRLHVRFADK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0197 706 Coils Coil 503 572 - -
Lal13g0197 706 MobiDBLite consensus disorder prediction 14 29 - -
Lal13g0197 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 17 704 - -
Lal13g0197 706 MobiDBLite consensus disorder prediction 619 640 - -
Lal13g0197 706 Pfam Zinc finger, C3HC4 type (RING finger) 649 697 - -
Lal13g0197 706 Pfam Family of unknown function (DUF6592) 62 170 IPR046527 -
Lal13g0197 706 SUPERFAMILY RING/U-box 647 699 - -
Lal13g0197 706 Coils Coil 588 615 - -
Lal13g0197 706 MobiDBLite consensus disorder prediction 178 196 - -
Lal13g0197 706 ProSiteProfiles Zinc finger RING-type profile. 652 692 IPR001841 -
Lal13g0197 706 PANTHER OS05G0141500 PROTEIN 17 704 IPR046934 -
Lal13g0197 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 702 IPR013083 -
Lal13g0197 706 MobiDBLite consensus disorder prediction 1 41 - -
Lal13g0197 706 MobiDBLite consensus disorder prediction 178 231 - -
Lal13g0197 706 Coils Coil 408 435 - -
Lal13g0197 706 MobiDBLite consensus disorder prediction 626 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0197 Lal-Chr13 1241040 1243518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0197 652 701 C3H Transcription Factor Family AT1G73950 50.000 2.20e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0197 - - lang:109335169 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0197 13 1241040 1243518 Lal13g0197 13 1241040 1243518 ECH
Lal12g0228 12 1616100 1620332 Lal13g0197 13 1241040 1243518 LSH