Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0175 ATGAGAGAGGGCTTGAGATCTAGGACTCTGTTACAGAAAGATTCCGGTGCTAGAGGAGTTGTGGAAAGTGGTGGAGTGGAAAAGAAGAGTTTTGATTTCAATGTGGAGGGTTCTTCACTGCCACAACAAGAGGAAGGGATGGACTTAACGACTGAGAAGAAGGAGGAGGTTGAATGTGCCGTGAAAAAAGAATGTGGTTTTGATTTGAATGAAAGTCCGAGTGTGAATGCTGATTTAGCTAATGATGTTATTGATAAGGGTTGTAGTAGTGGTAGGGGTGGGGGCAGCGTTAGAGAAGCTGATGCTGAGTCAGAGGTGAGTAAAAATGAAGCGAGTGGTAAGGGTTGTTGTAGTGGCGCTGGTAGCAGCGATAAAGAGGCTGTTGAGACATATAAGAATAAAAAAGGAGTTTCAAATGATAGCGTGTTAATTAGTGGTCGAGTATTGCGCTCTAGGTCAAAGAGGGGAGATGATACAAAATCTTTCAATGGAGAGAGCAGCAATGCCCTTACTGGGAAAAGTAATAAAAGTGGTGGGCTTGAGAGGGTAGAAGTTAAGAAGGAACATGTAGAAGCTGATGAATTTGTTAGTGACTGTCAGGAGAACGAAAGGGTTAGGTTGAAACAGAAAGGGTGCGAGAGTAATTTGAAAAGGAAGCGTGGCAGGCCTCCCAAAATAGAGCCGAGAGAGGAAGATCAATTTGTTGTTCAGTTGCCACGTAAGCGTGGGAGGCCTCCCATAATAAGGTCGAATGAGCAAGGCCAATCAGGTGATCAATTGATACGTAAGCGTGGAAGACCTCCTAAGGCTGTCCTACAAAACAAGCTCCCAGAAATGACACATAATAGAAAAGGAAAGATGGGCTTTCAAAATGGTAAAAAATGTTTAATTGCCAGAGATAGTGCAACTGTGAATGCAGTACCTGATACGCACTCATTGAGAGCTTCTGAGAAAGATTTAGAAAATAATAGATTTTCTGCAGTCAAGAATAATAAATTTGTGAAGGTTTTGAAAACTGAAAACAATGGAGTAGCCTTACCGGTGTCATCAAATACAGTGAAACCACCTGTTGGTGATAAAAGTGTAAGTAACAAAGATAGACAGGTGGTGAGGGAGCAAATAATGGAGCGTCTCTCAGCTGCAGGCTGGACAGTTGATTATCGAAAAAGGAACGGAAGACAGTACCGCGATGCAGTGTATGTTAGTCTTGATGGAAAGACACACTGGTCAATCACCTTGGCTTACAATAGACTTAAAAACCATTATGAAGCTGGTGATGGTGAAGGCAAGGTATATGGGCCAGGTTTCAAATTTACTCCAATACCAGAAGAGGATTATAAAATATTAACTAAGGTAATCAGCAAGGAAAGAAATGATAAAAATAAACCAAGGCCAAAGGGGGGAAAGAGTGGAAAGACAGTTGATGGAGTAAATAGAAAAGTGAAAAAAGAAAAACAGGGTTCTGGTGCAGGCAAGGGGAAATTTAAAAGGAAACAGTCACTTCATGAAGCGGACAATGCGACATCAAGAAGAATGTCAGTCATGGTCAGGGATCATAAGCGACACAAAATGCAAAACAAGAAGCGATGTGCTCCATTGGTTCGCAATGCGGAGGAGGAGATAGATTCAGAAACTGATGGGTATGTACCTTACAATGGAAAGCGAACTGTGTTTGCCTGGATGATTGATTTGGGAACGGTTGTGGAAAACCAGAAGATTCATTATATGCATAATAGAAGGGAGTTTGCACCAGTGGAGGGTAGGATAACAGGAGATGGCATTCGTTGTGGCTGCTGTAATGAAATAGTAACAATTTCAGACTTTGAAGCTCATGCAGGAAGCAAACTCTCTGAATCACTTAAAAATATATATACAGAGGGAGGAACTTCTCTCTTACAATGCCTGCTAGATTCATGGAATAAACAAGATGAGTTTGAACGTAAAGGTTTTCATTTTGTTGATACCGTGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCGACATTCCACCAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGATTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGCTGGAGGAAGTTCAAACGAAAGGGACAGCGATGATGATTTTACCGTGTCTACATTACTGACATGCCATTCATGCCAGGAAAAATACCATAGATCTTGTATTGACTTAAATGATTCCAATACTGATGATTCCGGAGATCCCATTTTTTGTGGTAACAAATGTGATCAGTTATCTGAGAATCTCAAAGTGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGACGGTCAGATGTTGGTTTTGACACTTCTGAGATAAAACATGAGATGGTTGAATGTAATTCCAAGCTGGCTGTTACATTAACAGTTATGGATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACAAACCTGATCCACAGTATTCTATATAATTGTGGATCAAACTTCAAACGACTGAACTATAGTGGATTTGTTACTGCAATTCTAGAGAGAGGTGATGAAGTCATCTCTGCAGCAACTATAAGGATCCATGGGAACAAACTAGCAGAGATGCCATTTATTGGGACCCGTTACATGTATAGGCGACAAGGAATGTGCCGCCGACTTCTAAATGCCATTGAATGCGCACTCAGCTCTTTAAATGTTGATTTATTGGTCATACCAGCTATCTCAGAACTCAGAGAAACATGGACGTCTGTTTTTGGATTTGAGCCACTTGACTTGACAAGCAAGAATTTAATAAATAACATGAATCTTGTGGTATTCCCTCATGTAGATATGTTACAGAAAAAGATACCTAAGCATAAAGTAGCTGGTGAGAATCTGATTCCTATAGAAGTTTCTAATCTTCAGAAGAGTCATACAATACACAAGGTAGCAAATAGTTGTGATGGGGCGGGCTCATCGGGATCTGACTTGATCAGTTCTGCCGGGATCCCTCCCTCTATTGCATGTCAGATAAATGAATCTTGTTCTCAGCCTCCTATGGGATCCTTGAATGATGCACCTGTCATCACTAGCAACACTATACATCATGATAAGTCTTCAGATGTCACATGTGAAGTTGTATGTCAGGCAGTTGATGAAAATGTGGCAGTGGAAGCTGCAAATGCCTGTAATTGTGCCATATCGTACCATAATCAGACGTCAATAGATTTGGATAGCCAGTTGAACAAATGTGAAGTTGTATGTCAGGCAGTTGATGAAAATGTGGCAGTGGAAGCTGCAAATGCCTGTAATTGTGCCATATCGGACCATGATCAGAAGTCAACAGATTTGGATAGCCAGTTGAACAAATGCTGTGTTACTAATGAGGAAAAGCAATGTCTTGGTGTGTCCCATATTAGCACTGAAGCTGCTGAAGGACATGAGCTGAAAAACAAAACTGATTTTGTTCAGCCATACTTCAAAGGATCAGAAGTACATGCTGAAGCTGTTAATGGTTGTGCTTCTCACTGTAGACCCAACACCGACAGTGATTGTGCCGCCGGTGAAGCAGTTCTCACAACAATTGTCAAAAATAATATCATTGAAGATTTGCCTGTGGCTAATTGTGAAAAAGGTTCCAGTATGGTTACTACTGTACCAAATGGGAATGAAGCAGAAAGATTTTCAGCCAAAGCACCCAATCCTGGAGTTTGCGAATCCATAGTGGCATCTTCAGGTTTTCGCAAGAAGACTGCTGATGGTGTTGATGAGAGAAGTGAAGCACCCAGTGTAGTTGAGGTCAATTTGCTTCCTGCTGATAAAGGCATATTTCCGGATACTAAGCCAGAGATTGCAGGGTCTTCAGAGTTAGCTGAGCCTGATCTGCAGCTTGGTCAAAATGCACGGAGCAACCCTCCATCATCGTGTACCCCAAACACTGCTTCTGGCGTGGGTCCTCATTGGGCATCGGCTGGCAGTACTTCATGCGGTAGTACTGAGGCAATAGTTCTGTCAAACCAAGCCGGTTGA 4056 0.4174 MREGLRSRTLLQKDSGARGVVESGGVEKKSFDFNVEGSSLPQQEEGMDLTTEKKEEVECAVKKECGFDLNESPSVNADLANDVIDKGCSSGRGGGSVREADAESEVSKNEASGKGCCSGAGSSDKEAVETYKNKKGVSNDSVLISGRVLRSRSKRGDDTKSFNGESSNALTGKSNKSGGLERVEVKKEHVEADEFVSDCQENERVRLKQKGCESNLKRKRGRPPKIEPREEDQFVVQLPRKRGRPPIIRSNEQGQSGDQLIRKRGRPPKAVLQNKLPEMTHNRKGKMGFQNGKKCLIARDSATVNAVPDTHSLRASEKDLENNRFSAVKNNKFVKVLKTENNGVALPVSSNTVKPPVGDKSVSNKDRQVVREQIMERLSAAGWTVDYRKRNGRQYRDAVYVSLDGKTHWSITLAYNRLKNHYEAGDGEGKVYGPGFKFTPIPEEDYKILTKVISKERNDKNKPRPKGGKSGKTVDGVNRKVKKEKQGSGAGKGKFKRKQSLHEADNATSRRMSVMVRDHKRHKMQNKKRCAPLVRNAEEEIDSETDGYVPYNGKRTVFAWMIDLGTVVENQKIHYMHNRREFAPVEGRITGDGIRCGCCNEIVTISDFEAHAGSKLSESLKNIYTEGGTSLLQCLLDSWNKQDEFERKGFHFVDTVGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDIKKFPSGDWHCIYCCCKFCGLAGGSSNERDSDDDFTVSTLLTCHSCQEKYHRSCIDLNDSNTDDSGDPIFCGNKCDQLSENLKVLLGVKHEIEDGFSWSFIRRSDVGFDTSEIKHEMVECNSKLAVTLTVMDECFMPYIDHRSGTNLIHSILYNCGSNFKRLNYSGFVTAILERGDEVISAATIRIHGNKLAEMPFIGTRYMYRRQGMCRRLLNAIECALSSLNVDLLVIPAISELRETWTSVFGFEPLDLTSKNLINNMNLVVFPHVDMLQKKIPKHKVAGENLIPIEVSNLQKSHTIHKVANSCDGAGSSGSDLISSAGIPPSIACQINESCSQPPMGSLNDAPVITSNTIHHDKSSDVTCEVVCQAVDENVAVEAANACNCAISYHNQTSIDLDSQLNKCEVVCQAVDENVAVEAANACNCAISDHDQKSTDLDSQLNKCCVTNEEKQCLGVSHISTEAAEGHELKNKTDFVQPYFKGSEVHAEAVNGCASHCRPNTDSDCAAGEAVLTTIVKNNIIEDLPVANCEKGSSMVTTVPNGNEAERFSAKAPNPGVCESIVASSGFRKKTADGVDERSEAPSVVEVNLLPADKGIFPDTKPEIAGSSELAEPDLQLGQNARSNPPSSCTPNTASGVGPHWASAGSTSCGSTEAIVLSNQAG 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0175 1351 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 41 1142 - -
Lal13g0175 1351 PANTHER PHD FINGER PROTEIN 12 41 1142 IPR042163 GO:0003714|GO:0045892
Lal13g0175 1351 MobiDBLite consensus disorder prediction 244 267 - -
Lal13g0175 1351 CDD PHD1_AIRE 665 704 - -
Lal13g0175 1351 SUPERFAMILY FYVE/PHD zinc finger 658 710 IPR011011 -
Lal13g0175 1351 SMART PHD_3 706 766 IPR001965 -
Lal13g0175 1351 SMART PHD_3 664 705 IPR001965 -
Lal13g0175 1351 MobiDBLite consensus disorder prediction 1306 1338 - -
Lal13g0175 1351 MobiDBLite consensus disorder prediction 208 230 - -
Lal13g0175 1351 MobiDBLite consensus disorder prediction 83 185 - -
Lal13g0175 1351 MobiDBLite consensus disorder prediction 454 505 - -
Lal13g0175 1351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 722 IPR013083 -
Lal13g0175 1351 Pfam Tify domain binding domain 587 636 IPR032308 -
Lal13g0175 1351 SMART AT_hook_2 239 251 IPR017956 GO:0003677
Lal13g0175 1351 SMART AT_hook_2 217 229 IPR017956 GO:0003677
Lal13g0175 1351 SMART AT_hook_2 261 273 IPR017956 GO:0003677
Lal13g0175 1351 MobiDBLite consensus disorder prediction 454 511 - -
Lal13g0175 1351 ProSiteProfiles Zinc finger PHD-type profile. 662 707 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0175 Lal-Chr13 1099599 1107020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0175 181 971 PHD Transcription Factor Family AT5G36670 39.647 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0175 - - lang:109346644 1926.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0175 13 1099599 1107020 Lal13g0175 13 1099599 1107020 ECH
Lal12g0204 12 1468077 1477187 Lal13g0175 13 1099599 1107020 LSH