Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0156 ATGAATATGAAGGACACAGAGTTAAGGTTGGGGTTGCCAGGAACTGATGACATGGAGAAAAGTTCATGCAATTACTCTGTTGTTAGAAGCAACAACAAAAGATCTTCACCAGAAGCTAGTGATCAAGAAGAATCCATAAGCAAGAATGGTTCTAATTCCATAATTGATGATGACCAACACAATTATGTCTCACCTTCAAAGGCACAAGTAGTTGGGTGGCCACCAATTAGATCATATAGGAAGAACAATATACAACAGAAGAAGAATGAGAAAGTTGATGGGGCTGGGATGTATGTAAAAGTGAGCATGAGTGGTGCACCTTATTTGAGGAAGATAGATATCATGGTTTACAAAAGCTACTTTGAACTACTAAAGGCCTTGGAAAATATGTTGAAGTGCAGATTTGGTGAATATTCAGAAAGAGAAGGGTATAATGGATCTGAATATGTTCCAACTTATGAAGACAAGGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGCAAATGTTCATGTCTTCCTGCAAAAGGCTGAGAATTATGAAAGGATCAGAAGCAAAGGGGTTCAAAAAATAA 576 0.3802 MNMKDTELRLGLPGTDDMEKSSCNYSVVRSNNKRSSPEASDQEESISKNGSNSIIDDDQHNYVSPSKAQVVGWPPIRSYRKNNIQQKKNEKVDGAGMYVKVSMSGAPYLRKIDIMVYKSYFELLKALENMLKCRFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWQMFMSSCKRLRIMKGSEAKGFKK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0156 191 SUPERFAMILY CAD & PB1 domains 94 182 - -
Lal13g0156 191 Pfam AUX/IAA family 6 189 IPR033389 -
Lal13g0156 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 189 IPR003311 GO:0005634|GO:0006355
Lal13g0156 191 MobiDBLite consensus disorder prediction 42 60 - -
Lal13g0156 191 ProSiteProfiles PB1 domain profile. 96 183 IPR000270 GO:0005515
Lal13g0156 191 PANTHER AUXIN-INDUCED PROTEIN 1 189 - -
Lal13g0156 191 MobiDBLite consensus disorder prediction 19 35 - -
Lal13g0156 191 MobiDBLite consensus disorder prediction 1 60 - -
Lal13g0156 191 Gene3D - 90 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0156 Lal-Chr13 1001813 1003956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0156 99 190 B3 DNA Binding Superfamily AT2G46530 35.870 1.73e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal13g0156 AUX_IAA 1.9e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0156 K14484 - gmx:100780752 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0156 13 1001813 1003956 Lal13g0156 13 1001813 1003956 ECH
Lal13g0156 13 1001813 1003956 Lal12g0182 12 1277332 1278630 ECH
Lal12g0182 12 1277332 1278630 Lal13g0156 13 1001813 1003956 LSH