Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0140 ATGGGTAATGTTGAAATCCCCAATTGGCTCGAAGGGTTGCCTCTGGCACCGGAATTTCGTCCTACAGAAACCGAATTCTCAGACCCAATTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGTACCTTTGGGATATGCAAGATTATCCCACCATTGCCCAAACCTTCAAAAAAGTATGTTTTTTCCAATTTGAATAGGTCACTATTGAAGTGTCCTGAATTGGGCCAAGTTAGCAGTTCCTTAGGTGCTTGTAATTCTTTGAAAACGAGCTATAGGGATAGTTGTAGTGATTGCGCGCCGCGAGCTGTGTTTACTACTAGGCAGCAAGAACTAGGGCAGAGTGTGAAAAAGGCCAAAGGGGCAGGTCAGAACCCAATATCATGTGTGCAAAAGCAAGTATGGCAAAGTGGGGAGGTTTATACACTGGAACAGTTTGAGTCTAAATCAAAGACTTTCGCAAAAAGCGTGCTAGGGACGGTGAATGATGTTTCTCCACTGGATATAGAGGCTATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATGTATATTGAGTATGCCAATGATGTGCCTGGCTCTGCTTTTGGAGAATCGAAGGGTGAATTTTGTTACAGTCCTACAAAGCAGAGAAGAAGGACTTATTATAAGAGTAGAATAGATAGCTCTGATTGTAGACAAACTGAACTGAATAGTGTAAGAGATGCCAAAGGTAATGAGACTAAGGGTGCTTCTTCCGAGACTCACGCGGGCCCATGTTTAAATATGTACGAATCAGCTACACCCGTGTCAACATTTCCATTGAATGAAGCTTCACAATGTTCTAGTGGAAAAGGTTCTGAAGTCAGCAATGATATCCAAGGCACTTCTGGCTGGAAGCTTTCAAATAGCCCGTGGAACTTACAGGCTATTGCACACTCATCTGGATCCTTAACGCGCTTCATGCCAGATAATATTCCTGGTGTTACTTCACCCATGGTGTACATTGGTATGCTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTCCATAGCATGAATTTTCTTCACACTGGATCATCCAAGACTTGGTATTCTGTTCCCGGAGATTATGCCTTTGCTTTTGAGGAGGTCATCCGCTGTCAAGCTTATGGTGATAACATTGATCACTTAGTAGCTGGATACCTTGTTTGTGTAACTCAAGTACTGTTTCTTTTCTTGTCAGCTGCTTTGAAACTTTTGGGTGAGAAAACAACTCTTTTATCACCTCAGATAATTATTGCATCTGGGATTCCTTGTTGCAGGTTAATACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGGTTCAGTCACGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTACAATAGCTAAGGAAGCTGCAGTGCGTAGAGCTGTGATGAATTATCTTCCCATGCTCTCCCATCAGCAATTGCTTTACTTGTTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCCGGTGTGCGCTATTCACGTCTAAAAGATCGTCAAAAAGAAGAAAGGGAGTTCTTAGTAAAAAAAGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGATATCCATCCTTCTTGGAAATGAAGCAACCAAACAGGCTGTTTTATGGAATGCTGATTTACTACCAAATTTCAGTAAACGTTGTCAGTTGTCTGATTTAACTTCTAAAACTGGAAGTTCTGTAGCGGACTTGTCCAATATTAGTTCTTCAGATAAAAGTTGCCATTATCTGTTTGACGAGATGAGTTTGCATGGGGAGAATCTGACTGATTCATATCTTGGTGATGTCGACGATGATCTTTCATGTGACTTCCAAACTGATTCGGGACCCTTGGCTTGTGTGGGTTGTGGAGTACTTGGTTTTCCATTTATGACTGTGGTGCAACCATCTGAGAAATTGACATTGGAACTTTTTCCTGTTAATCAGCATCTAGTTCAAGATTCCTCTCTGAACTCTACTGCCTCCCTTCATAGCTCAGTCTCAACAAAGGAATCATCCAATCAATCATTTAAGGCATTCAATAAATATTGGAATGCCTCCAGTAAATTTGTGAGACCACGGATTTTCTGTTTGGAGCATGCTGTTCAGATAGTGAATATGTTGCAGTGCAAAGGTGGAGCAAATGTGCTAATAATTTGCCATTCAGACTACCAGAAAATGAAGGCACATGCCAGTGCAGTTGCAGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCGTTAGATATTGCATCCCCAGAAAATTTGACTCTGATTGATTTGGCAATTGATGGTGGACAGCATGACGAATATGAAGATTGGACATCTAAACTAGGCATTAACCTCCGGTATTGTGTCAACGCAAGAAATAACTCTCCATCTAAACAAGTTCCCTGGACACTAGAGTTAGGGATGCTGTTCTCTGATAAACATTCTGATTTAGAATTTTTATCATTAAATTGGCAGTCACGGAGATCTCGGTCCAAAAGGTTAAATCATTCAGATCAGACTAAAATCTGTGACAAAAGTCAGAGAAAGAAGGATGGTCAGTTGGAGGGAAGAAAAGATGGCTCCACTGCCAAAAAGAAGCTAATTCATTATTCAAGAAGGAAGTTCAAATCAAAGCAAAGTTGTTCCTCGGGACTGAGCATGGTCCATACATTCCAGGAGAAGTCCACAAATGTGTCAGCTGTCTTGAGTGGGGAACATTATGATTGTGTTTCTAAATGTGAGCTTGACACCAGCAATTTCAGGAGTGAATGTGCACTGTCAGGTGTGTCTGCTTCTACTGCAATGTCTCCAACGCATCATGAAATGTCTACAAAGAATCTGGATGATGAGGTGCATAAAGAATATCAGTCTGCCTGCAAAAGCAACAATGGGGAAGCTACTTTATCTACTGTTACATTGGTAAATCAACCTATGCTTGCTTCTGTGGATGAAAGTTTTGAAAGTCCAAACAACAATTATGCTGCTGAAAAAGTTAGCAATGGTATGTCATTAAAGGAGACTATTGGGCAAGAAATTAATTCTTTGAGTGATAGGGACAAGGAACCTCTCAGTGGTGATAAACCAATAAGTGAGTATATTCCAAATAGAGAAGTTTGTGAAGTTCCAAGACAGCCTTTTGCTGCTCCAGACTTGATTGATACTGTTATGGATGCTGAGAGGCAGTGCCAAGCCCAAAATAAGAGTAAACTTATTGGGGAGCCTGTTTCTAGTTATGTTGCAAAAGGTGAAAATACAAGTGTAACTTTGTCAGAATTAGGATGTTCTGAAGTGTCAATGGGAACATGTCCTGAAGAAGACTCATTTGTTCAATTTATTTCAGATAAAGGAAGGGAACTGGAAATCCAAACAACTGATAGAAGTGATGAGGAAATTTGCTCTGGTAGTAAGACACCGTTAAAGGACTCTTCCTTATCAACCCAGGAATGTTCTAAAAATGAGAAAGAGATGTGTGTAGGACAAAATGTAAATGGAAGCGAAGTTCATTTGTTACAAGATAACAGGGAACCAGAAAGCTCTGACTTGACTGCCGTAGTTCCCCATTCAAATGCTCGGAAGAAAAGAAAGAGGGAAGTGGAACAGCTAACAGAGAACCAATCTGATTGCAGCAACTTTATAAGAAGTCCATGTGAAGGGCTGAGGCCTAGAGCTGGTAAGATCACTGCAGATAAAAGAAGTGGGGAGAGCAGTCAAAATGACAAAGAACACCAGGATGTTAGAAGGGCACATAGAGTGCGAGTTCATCACAAGAATAAAACTGATGATGATGTCAAAAAGCCCCACAGTTGTGAGCTTGACGGGTGTGATATGAGTTTCAGCACTAAGACGGAGTTACAGTTGCACAAACGCAATATTTGCCCATATAAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATACAATGCATCACCAGCGTGTTCATGATGATGAAAGGCCCCTCAAGTGCCCATGGAAAGGTTGTTCCATGACATTCAAGTGGGCATGGGCAAGGACAGAGCATATACGTGTGCATACCGGGGAGAAGCCTTATCAATGCAAGGTTGAGGGATGTGGCCTTTGCTTCAGATTTGTATCAGATTTTAGTAGGCATAGGCGGAAAACAGGACACTACGTGCAATCTTCTTCTTGA 4185 0.4127 MGNVEIPNWLEGLPLAPEFRPTETEFSDPIAYISKIEKEASTFGICKIIPPLPKPSKKYVFSNLNRSLLKCPELGQVSSSLGACNSLKTSYRDSCSDCAPRAVFTTRQQELGQSVKKAKGAGQNPISCVQKQVWQSGEVYTLEQFESKSKTFAKSVLGTVNDVSPLDIEAMFWKAASEKPMYIEYANDVPGSAFGESKGEFCYSPTKQRRRTYYKSRIDSSDCRQTELNSVRDAKGNETKGASSETHAGPCLNMYESATPVSTFPLNEASQCSSGKGSEVSNDIQGTSGWKLSNSPWNLQAIAHSSGSLTRFMPDNIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYSVPGDYAFAFEEVIRCQAYGDNIDHLVAGYLVCVTQVLFLFLSAALKLLGEKTTLLSPQIIIASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTIAKEAAVRRAVMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRYSRLKDRQKEEREFLVKKAFIEDMLQENKLISILLGNEATKQAVLWNADLLPNFSKRCQLSDLTSKTGSSVADLSNISSSDKSCHYLFDEMSLHGENLTDSYLGDVDDDLSCDFQTDSGPLACVGCGVLGFPFMTVVQPSEKLTLELFPVNQHLVQDSSLNSTASLHSSVSTKESSNQSFKAFNKYWNASSKFVRPRIFCLEHAVQIVNMLQCKGGANVLIICHSDYQKMKAHASAVAEEIHSAFDYNEVPLDIASPENLTLIDLAIDGGQHDEYEDWTSKLGINLRYCVNARNNSPSKQVPWTLELGMLFSDKHSDLEFLSLNWQSRRSRSKRLNHSDQTKICDKSQRKKDGQLEGRKDGSTAKKKLIHYSRRKFKSKQSCSSGLSMVHTFQEKSTNVSAVLSGEHYDCVSKCELDTSNFRSECALSGVSASTAMSPTHHEMSTKNLDDEVHKEYQSACKSNNGEATLSTVTLVNQPMLASVDESFESPNNNYAAEKVSNGMSLKETIGQEINSLSDRDKEPLSGDKPISEYIPNREVCEVPRQPFAAPDLIDTVMDAERQCQAQNKSKLIGEPVSSYVAKGENTSVTLSELGCSEVSMGTCPEEDSFVQFISDKGRELEIQTTDRSDEEICSGSKTPLKDSSLSTQECSKNEKEMCVGQNVNGSEVHLLQDNREPESSDLTAVVPHSNARKKRKREVEQLTENQSDCSNFIRSPCEGLRPRAGKITADKRSGESSQNDKEHQDVRRAHRVRVHHKNKTDDDVKKPHSCELDGCDMSFSTKTELQLHKRNICPYKGCGKKFSSHKYTMHHQRVHDDERPLKCPWKGCSMTFKWAWARTEHIRVHTGEKPYQCKVEGCGLCFRFVSDFSRHRRKTGHYVQSSS 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0140 1394 ProSitePatterns Zinc finger C2H2 type domain signature. 1334 1356 IPR013087 -
Lal13g0140 1394 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1383 - -
Lal13g0140 1394 SMART cupin_9 291 477 IPR003347 -
Lal13g0140 1394 ProSitePatterns Zinc finger C2H2 type domain signature. 1304 1326 IPR013087 -
Lal13g0140 1394 SMART c2h2final6 1332 1356 IPR013087 -
Lal13g0140 1394 SMART c2h2final6 1362 1388 IPR013087 -
Lal13g0140 1394 SMART c2h2final6 1302 1326 IPR013087 -
Lal13g0140 1394 SMART c2h2final6 1279 1301 IPR013087 -
Lal13g0140 1394 SUPERFAMILY beta-beta-alpha zinc fingers 1302 1339 IPR036236 -
Lal13g0140 1394 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1383 - -
Lal13g0140 1394 ProSiteProfiles Zinc finger C2H2 type domain profile. 1332 1361 IPR013087 -
Lal13g0140 1394 Pfam JmjC domain, hydroxylase 324 460 IPR003347 -
Lal13g0140 1394 MobiDBLite consensus disorder prediction 229 248 - -
Lal13g0140 1394 Gene3D Classic Zinc Finger 1300 1386 - -
Lal13g0140 1394 ProSiteProfiles Zinc finger C2H2 type domain profile. 1302 1331 IPR013087 -
Lal13g0140 1394 Pfam jmjN domain 17 50 IPR003349 -
Lal13g0140 1394 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Lal13g0140 1394 SUPERFAMILY Clavaminate synthase-like 292 473 - -
Lal13g0140 1394 MobiDBLite consensus disorder prediction 1231 1260 - -
Lal13g0140 1394 MobiDBLite consensus disorder prediction 842 875 - -
Lal13g0140 1394 MobiDBLite consensus disorder prediction 1235 1258 - -
Lal13g0140 1394 ProSiteProfiles Zinc finger C2H2 type domain profile. 1362 1393 IPR013087 -
Lal13g0140 1394 ProSiteProfiles JmjC domain profile. 284 477 IPR003347 -
Lal13g0140 1394 MobiDBLite consensus disorder prediction 1186 1206 - -
Lal13g0140 1394 ProSitePatterns Zinc finger C2H2 type domain signature. 1364 1388 IPR013087 -
Lal13g0140 1394 Gene3D Cupin 9 481 - -
Lal13g0140 1394 MobiDBLite consensus disorder prediction 843 875 - -
Lal13g0140 1394 SUPERFAMILY beta-beta-alpha zinc fingers 1342 1384 IPR036236 -
Lal13g0140 1394 SMART JmjN_1 15 55 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0140 Lal-Chr13 910136 917844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0140 1 886 C2H2 Transcription Factor Family AT5G04240 55.260 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal13g0140 JmjC 7.2e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0140 - - adu:107467970 1654.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0140 13 910136 917844 Lal13g0140 13 910136 917844 ECH
Lal12g0163 12 1164474 1171498 Lal13g0140 13 910136 917844 LSH