Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0139 ATGGAAATTTCAAAGGCAAATGATGTGAATGACAATAGTTCTATCAACTTTTGTAATAGTAGCACTACCACTCATGATGAAGACCCACTTAATTGGAACATAGCTGCGGATGCTTTAAAAGGTAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGACTACCGGAGGCCGGTGGTGAAGTTAGGTGGTAAGAGCCTCACAATATCTCAAGTTGCGGCGGTTGCTGGTGGTGTAACGGTGGAGCTGGCGGAGGAGGCCAGGGCCGGCGTCATGGCCAGCAGCCAGTGGGTGTTGGATAGCATGGAGAATGGGATAGATAGCTATGGAGTCACAACTGGGTTTGGTGCAACATCACACAGGAGAACAAAGAAGGGTGGTGCCCTCCAAAATGAACTCATTAGATTCTTGAATGCTGGCATTTTCGGGAATGGCACAGAATCCAACCACATCTTACCTCACTCAGCAACAAGAGCAGCAATGTTGGTTAGGATCAACACCTTACTTCAAGGATATTCAGGAATCAGATTTGAAATCTTGGAAGCAATAGCCAAGTTTCTGAACAATAACATAACTCCATGCCTTCCTTTAAGGGGTACAATCACTGCATCAGGTGACCTTGTCCCTTTGTCATATGTTGCTGCCCTTTTGCTTGGTAGGCCAAACTCCAAATCTGTTGGACCTAATGGTAAAGTTCTTAATGCCAAAGAAGCTTTTGAGCTAGCTGGGATTCATAGTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTTTGGCATTAGTGAATGGCACTGCAGTGGGATCTGGCTTAGCTTCCAAGGTTCTTTTTTATGTAAACATACTTGCTATCCTCTCAGAAGTGTTGTCTGCGATTTTCGCCGAAGTTATGCAAGGAAAACCGGAATTCACAGATCACTTGACACATAAACTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCTATAATGGAACATATTTTGGATGGAAGTGCATATGTTAAGGCTGCACAGGAGGTGCATGAGATTGATCCACTTCAGAAACCTAAACAGGATAGGTATGCTCTTAGAACATCACCTCAGTGGCTTGGACCACAGATTGAAGTAATAAGGCATGCAACAAAGATGATTGAGAGGGAGATAAACTCGGTCAATGACAACCCCTTGATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGGAATTTCCAAGGCACCCCTATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCTTCAATTGGGAAACTTATGTTTGCTCAATTCTCTGAGCTTGTAAATGACTTCTACAACAATGGTTTGCCTTCAAATCTTACAGCTAGCCGCAACCCGAGCTTGGATTATGGCTTCAAAGGTGCAGAAATTGCAATGGCATCTTACTGCTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTTCAGAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTAGGCCTGATATCATCAAGAAAAACATCTGAAGCATTGGACATATTGATGCTCATGTCTTCCACTTTCTTAGTTGCATTGTGCCAAGCCATCGATTTGAGGCACTTGGAGGAGAATTTGAAGTATGCTGTTAGAAACATTGTGAGCCATGTGACCAAGAGGGTCCTCACAACTGGTGTCAATGGTGAGTTGCATCCATCAAGGTTCTGTGAGAAGGACTTGCTCAAAGTTGTTGACCGCGAGTATGTGTTTGCTTACATCGATGACCCTTGCAGTGCAACATACCCTTTAATGCAGAAACTGAGAGCAGTCCTAGTTGATCATGCATTGAATAATGGTGATAAAGAGGTGAATTCACGTACCTCAATTTTCCAAAAGATAGGAGCCTTTGAGGAAGAGCTCAAGATCCTTTTGCCCATAGAGGTGGAAAATACCAGGGTTGAAGTTGAGAATGGAAACCCTGTTGTTCCTAACAAGATTAAGGAATGTAGGTCTTATCCTTTATACAAGTTTGTCAGAGAAATTTTGGGTACATCTTTGCTTACAGGTGAGAAAGTAAGGTCACCTGGTGAGGAATGTGATAAGGTATTCTCTGCATTGAATGAAGGGAAGCTGATTGACCCTCTCTTAGACTGCCTAAAGGAGTGGAATGGTGCTCCTCTACCAATATGCTAG 2151 0.4379 MEISKANDVNDNSSINFCNSSTTTHDEDPLNWNIAADALKGSHLDEVKRMVEDYRRPVVKLGGKSLTISQVAAVAGGVTVELAEEARAGVMASSQWVLDSMENGIDSYGVTTGFGATSHRRTKKGGALQNELIRFLNAGIFGNGTESNHILPHSATRAAMLVRINTLLQGYSGIRFEILEAIAKFLNNNITPCLPLRGTITASGDLVPLSYVAALLLGRPNSKSVGPNGKVLNAKEAFELAGIHSGFFELQPKEGLALVNGTAVGSGLASKVLFYVNILAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQEVHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEALDILMLMSSTFLVALCQAIDLRHLEENLKYAVRNIVSHVTKRVLTTGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRAVLVDHALNNGDKEVNSRTSIFQKIGAFEEELKILLPIEVENTRVEVENGNPVVPNKIKECRSYPLYKFVREILGTSLLTGEKVRSPGEECDKVFSALNEGKLIDPLLDCLKEWNGAPLPIC 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0139 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 28 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lal13g0139 716 Pfam Aromatic amino acid lyase 66 537 IPR001106 -
Lal13g0139 716 CDD PAL-HAL 64 526 IPR001106 -
Lal13g0139 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Lal13g0139 716 Gene3D - 529 650 IPR023144 -
Lal13g0139 716 SUPERFAMILY L-aspartase-like 27 716 IPR008948 GO:0003824
Lal13g0139 716 PANTHER HISTIDINE AMMONIA-LYASE 19 716 IPR001106 -
Lal13g0139 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Lal13g0139 716 Gene3D - 19 262 IPR024083 -
Lal13g0139 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0139 Lal-Chr13 899843 904899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0139 22 716 Monolignol Biosynthesis Gene Families AT3G53260 81.375 0.0 1193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0139 K10775 - gmx:100818777 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0096 20 620825 623808 Lal13g0139 13 899843 904899 ECH
Lal1g1811 1 20447460 20450249 Lal13g0139 13 899843 904899 ECH
Lal13g1491 13 14436618 14441908 Lal13g0139 13 899843 904899 ECH
Lal12g0949 12 8084350 8090877 Lal13g0139 13 899843 904899 ECH
Lal13g0139 13 899843 904899 Lal13g0139 13 899843 904899 ECH