Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0136 ATGGACAAGATGGTGGGACCAAACTTCATAGACGAGATTGACTGCGGTAACTTCTTTGACCACATCGATGATCTCCTTGACTTTCACGTTGAAGACGTCGTCGACGGCAGCGCCACTACCTTGCATGGCGTCTCAGCTGCCGGAGACTCCAATTCGCTTGCCAGCATCTGGCCACCGGAGACTGACTCTATATTTTCCAGCAAAAGTACTTCCGACCTCTCGGTAGAGCTCTCTGTTCCGTATGAAGATATTGTTCAATTGGAATGGCTGTCTAACTTTGTGGAGGATTCCTTCTCTGGTGGAAGCCTCACCATGAGCAAAGTGGAGCAACCATCTTGCACCACCACCGCCGCCACCAAGGAGGACTCATCATCAGTTCACACCCAATTCCAGACATCTAGCCCAGTGTCTGTCCTCGAAAGCAGCAGCTCCTGTTCTGGTGGTAAGACCATCCCTCGCAGCAGCCCGGAGATTTATATCCCGGTGCCTTGTGGACGTGCGCGCAGCAAGCGTCCACGCCGGACTGCCTTCAACCCTCGCCCGGCAATGCAGCTCATCTCCCCTGCTTCCTCTTCTGTTGGGGAGAATATGCAGTCCAATGTTATCTCTGCCAAGGCCTCTTCAGACTCTGACAATTTTGCTGAGTCTCAACCTGTGGCAAAGATTCCAAAACAAGGTTCCGGGGAGTATAAGAAGAAAAAGAAAATCAAACTCTCACTTCCATCATCTCCAGATGCTGATCATACTAACCAGAATGGTCAAGCAATTAGGAAATGTATGCATTGTGAAATAACTAAGACACCACAGTGGAGGGCTGGACCAATGGGGCCAAAAACACTTTGCAATGCGTGTGGCGTTCGATACAAGTCTGGCCGGCTTTTCCCTGAATACCGACCCGCTGCTAGTCCAACTTTTTGTCCATCGGTACATTCCAATTCTCATAAGAAGGTCCTGGAAATGAGATGCAGGAGTATTGAGGAAACTAGTTTTGGAACCCATTCAGCTGTTTCTGTAGAACTCATTCCAAATACTAACAGCAGCATCCTTACCCTGGAGTAA 1059 0.4939 MDKMVGPNFIDEIDCGNFFDHIDDLLDFHVEDVVDGSATTLHGVSAAGDSNSLASIWPPETDSIFSSKSTSDLSVELSVPYEDIVQLEWLSNFVEDSFSGGSLTMSKVEQPSCTTTAATKEDSSSVHTQFQTSSPVSVLESSSSCSGGKTIPRSSPEIYIPVPCGRARSKRPRRTAFNPRPAMQLISPASSSVGENMQSNVISAKASSDSDNFAESQPVAKIPKQGSGEYKKKKKIKLSLPSSPDADHTNQNGQAIRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCRSIEETSFGTHSAVSVELIPNTNSSILTLE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0136 352 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355|GO:0043565
Lal13g0136 352 CDD ZnF_GATA 258 315 IPR000679 GO:0006355|GO:0043565
Lal13g0136 352 SMART GATA_3 253 303 IPR000679 GO:0006355|GO:0043565
Lal13g0136 352 Gene3D - 254 303 IPR013088 GO:0006355|GO:0008270
Lal13g0136 352 MobiDBLite consensus disorder prediction 114 151 - -
Lal13g0136 352 PIRSF Txn_fac_GATA_plant 3 347 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lal13g0136 352 PANTHER GATA TRANSCRIPTION FACTOR 8 4 348 - -
Lal13g0136 352 MobiDBLite consensus disorder prediction 114 152 - -
Lal13g0136 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 257 316 - -
Lal13g0136 352 MobiDBLite consensus disorder prediction 206 251 - -
Lal13g0136 352 Pfam GATA zinc finger 259 292 IPR000679 GO:0006355|GO:0043565
Lal13g0136 352 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355|GO:0043565
Lal13g0136 352 PANTHER GATA TRANSCRIPTION FACTOR 4 348 - -
Lal13g0136 352 MobiDBLite consensus disorder prediction 226 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0136 Lal-Chr13 875011 878704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0136 22 321 C2C2-Gata Transcription Factor Family AT4G32890 37.217 1.58e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal13g0136 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0136 - - lang:109340763 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0159 12 1132076 1135436 Lal13g0136 13 875011 878704 ECH
Lal13g0136 13 875011 878704 Lal13g0136 13 875011 878704 ECH
Lal12g0159 12 1132076 1135436 Lal13g0136 13 875011 878704 LSH
Lal13g0136 13 875011 878704 Lal24g0127 24 907623 910897 LSH
Lal9g0919 9 6946862 6950989 Lal13g0136 13 875011 878704 PCT
Lal13g0136 13 875011 878704 Lal9g0919 9 6946862 6950989 PCT