Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0132 ATGGATAACGATATTGGGGTTAATGTGCGTGGCTCCGCCTATGGAAAGGACTACTATGACCCTCCTCCAGCACCCTTCATTGATGTTGAGGAGCTATCAAAGTGGTCTTTATATAGGGCAGTCATAGCTGAGTTCATTGCCACTTTGCTCTTCCTTTACATTGGTGTCCTTACTATAATTGGTTACAAGAGCCAAACTGATACAAAAGCTAATGGTGATGTATGTGGTGGTGTTGGTCTTCTTGGAATTGCATGGGCTTTTGGTGGCATGATCTTTGTTCTTGTTTATTGCACAGCTGGAATCTCTGGGGGTCACATTAATCCAGCAGTGACATTTGGGCTGTTCTTGGCTCGCAAGGTGTCTTTGCCAAGAACCATCTTATACATAGTGGCTCAGTGCTTAGGAGCAATCTGTGGAGCTGGGTTGGTCAAGTCTCTCAACAAGTCTCTCTTCAACACGTATGGTGGTGGGGCCAATTCCCTCAATGATACCTATAGCACTGGTACTTCATTGGGTGCTGAGATTATTGGAACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTTCCGGTTTTGGCTCCACTTCCCATTGGTTTTGCTGTATTCTTGGTTCACGTGTCCACACTCCCAGTAACTGGCTCTGGCATTAACCCTGCTAGGAGTTTTGGAGCTGCTGTTGTCCTCAACCAATCTAAGGCATGGCATGACCTTTGGGTCTATGTGGTAGGACCATTTATTGGGGCAGCCATTGCAGCTTTCTACCACCAGTTCGTCTTGAGAGCAGGTGCAGTTAATGTTCTTGGATCATTCAGGGGCAACCCCATTGATTGA 864 0.4618 MDNDIGVNVRGSAYGKDYYDPPPAPFIDVEELSKWSLYRAVIAEFIATLLFLYIGVLTIIGYKSQTDTKANGDVCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRTILYIVAQCLGAICGAGLVKSLNKSLFNTYGGGANSLNDTYSTGTSLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFLVHVSTLPVTGSGINPARSFGAAVVLNQSKAWHDLWVYVVGPFIGAAIAAFYHQFVLRAGAVNVLGSFRGNPID 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0132 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Lal13g0132 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 PANTHER AQUAPORIN PIP2-4-RELATED 12 284 - -
Lal13g0132 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Lal13g0132 287 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lal13g0132 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lal13g0132 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 284 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0132 Lal-Chr13 848015 852836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0132 1 281 Major Intrinsic Protein MIP AT5G60660 75.445 3.12e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0132 K09872 - gmx:100817292 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0151 12 1052168 1055703 Lal13g0132 13 848015 852836 ECH
Lal20g0093 20 588654 591908 Lal13g0132 13 848015 852836 ECH
Lal1g1816 1 20519335 20521969 Lal13g0132 13 848015 852836 ECH
Lal13g0132 13 848015 852836 Lal13g0132 13 848015 852836 ECH
Lal12g0151 12 1052168 1055703 Lal13g0132 13 848015 852836 LSH