Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0126 ATGGGAAGTAAGTGGAAAAAAGCGAAGGTGGCTCTGGGTATGAATCTGTGCATGTTAGTTCCCAGAACCTTAGATGATGATTCGCCACATCCCGCGGTGGTTTCTGAGAGATTGTCGGATGCTGCACTGCTCTCTCCGGCGGCGAACTGGGACATGGGTTCGTCACGATCGTCGACGCCGGTGCCATCTTTGTACGGTTTGAAGAAGTTATCGAAAAGTAGCAGCGAGTCCTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGGAACAAGGATCTGGCCATGCTATATTTACGGCCGAATGTTCACATTCCTTTCATTTCCACTGCATTGCTTCAAGTGTGAAACATGGAAACCGAATATGTCCGGTGTGCAGAGCAAAATGGAAGCAAGTACCCTTTTCAGGTCCCAGGTTGGATCCTATCGTAGGCAGATATTCAGGGAGTCCAACAAATTGGTCACAAAATGATGCTTTGATGGCTGTGGTCCACGGACTACCACTACCTCATCCTCGGCGAGATTTGAATAGGCGGCATATTGTGCCACTAAATCAGACTACCGAGCCAGGCATATTTGATGACGATGAATCCTTAAATCACCAACCTGTATTTCCTGAGAAAAGCCCTTCCAGTAAGAGTACTGAAGATACTGGTGCTTTTAGAGCAATGGAGATTACAACGTACCCTGAAGTTTCAGCTGTTCCTCGATGCAATACTTATTCTAATTTCACTGTTTTAGTTCATCTCAAAGCTACTGCTGCAGCAGCAACTACAGCAGCCAGAAGAGAAAACCTCAGTAGAAATCACTCTAGCTTGACACAGATTTTTCACACTCCACGTGCTCCTGTTGACCTGGTCACAGTGCTTGACATCAGTGGCAGCATGGCTGGAACCAAGCTTGCACTACTAAAAAGAGCTATGGGGTTTGTTATACAGAACCTAGGCTCTAATGATCGGCTCTCGGTTATTGCTTTCTCTTCCACAGCTCGCCGCCTTTTCCCCCTTCGTAGGCTGACTGATTCTGGGCGACAACAGGCGTTGCAAGCTGTGAATTCTTTGGTTGCAAATGGAGGTACCAATATTGCTGAAGGGCTGAGAAAAGGTGCTAAGATAATGGAGGACCGTAAAGAAAAGAATCCGGTTGCCAGTGTTATACTTCTGTCTGATGGTCAAGATAATTACACTGTCAATGGCTCTGGAAATAACCAACCTCGACCGAATTACCAGCTGCTTCTGCCTCCTTCTATAAGCTACCGTGATAATTCAGGTTTTCAAGTTCCTGTGCATACGTTTGGATTTGGTACAGATCATGATGCTTTATCAATGCACTCAATTTCAGAGACTTCTGGTGGCACATTTTCTTTCATCGAAAATGAAGCTGTGTTACAGGATGCATTTGCACAATGCATTGGAGGACTTTTGAGTGTTACTGTTCAGGAGCTGCAAGTAGAAATTGAGTGTATACACCAAGATCTCAGTCTTGTTTCACTCAAGGCAGGAAGTTACCCGAGCCGTCTGACCGCTAATGGACGCAAAGGATTTATTGATGTTGGAGACTTGTATGCTGATGAAGAGAGGGATTTTCTAGTTTCAGTTACTGTACCAGCTACATCTGACAATGAAACATCATTGCTAAAAGTCAAATCTATTTGCAAGGATCCCTTAACTAAGGAAACATCAACAGTGGAAAGTGAAGATGTAAAGATTGAGAGGCCTGGGATAGCCGTGCGGGTTGAAATGTCAATTGAAGTGGATAGACAGCGGAACAGGCTCCAAGCAGCGGAAGCAATGTCCAAAGCACGAGTTGCAGCTGAACAGGGAGACCTAACCGGTGCAGTATCAGTCCTTGAAAACTGCAGAAAGATGCTGTCAGAAACTGTTTCAGCCAAATCTCAGGATCGGCTTTGTGTTGCATTGAATGCTGAACTCAAGGAAATGCAAGAGAGGTTGGTGAGTAGGCAAGTGTATGAAGCATCTGGGAGAGCATATATACTTTCTGGATTGAGTTCACACTCTTGGCAAAGAGCAACAGCAAGAGGTGATTCAACCGACGTGTCCAGTATAATTCAGGCATATCAGACACCATCAATGACGGAGATGCTCAATCGATCTCAAACAACTTCAATAGGTAGTACATCAGGCCAGAGGCTTCTTCAGCCACTGTTGTCATACAGATCACATCCAAACCCAAGGTAA 2196 0.4513 MGSKWKKAKVALGMNLCMLVPRTLDDDSPHPAVVSERLSDAALLSPAANWDMGSSRSSTPVPSLYGLKKLSKSSSESSKQTCSICLTKMEQGSGHAIFTAECSHSFHFHCIASSVKHGNRICPVCRAKWKQVPFSGPRLDPIVGRYSGSPTNWSQNDALMAVVHGLPLPHPRRDLNRRHIVPLNQTTEPGIFDDDESLNHQPVFPEKSPSSKSTEDTGAFRAMEITTYPEVSAVPRCNTYSNFTVLVHLKATAAAATTAARRENLSRNHSSLTQIFHTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRLTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASVILLSDGQDNYTVNGSGNNQPRPNYQLLLPPSISYRDNSGFQVPVHTFGFGTDHDALSMHSISETSGGTFSFIENEAVLQDAFAQCIGGLLSVTVQELQVEIECIHQDLSLVSLKAGSYPSRLTANGRKGFIDVGDLYADEERDFLVSVTVPATSDNETSLLKVKSICKDPLTKETSTVESEDVKIERPGIAVRVEMSIEVDRQRNRLQAAEAMSKARVAAEQGDLTGAVSVLENCRKMLSETVSAKSQDRLCVALNAELKEMQERLVSRQVYEASGRAYILSGLSSHSWQRATARGDSTDVSSIIQAYQTPSMTEMLNRSQTTSIGSTSGQRLLQPLLSYRSHPNPR 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0126 731 CDD RING-H2 82 126 - -
Lal13g0126 731 SMART ring_2 82 125 IPR001841 -
Lal13g0126 731 ProSiteProfiles VWFA domain profile. 284 470 IPR002035 -
Lal13g0126 731 Coils Coil 629 649 - -
Lal13g0126 731 Coils Coil 577 597 - -
Lal13g0126 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 133 IPR013083 -
Lal13g0126 731 SUPERFAMILY vWA-like 279 470 IPR036465 -
Lal13g0126 731 Gene3D von Willebrand factor, type A domain 284 471 IPR036465 -
Lal13g0126 731 Pfam Ring finger domain 81 126 IPR001841 -
Lal13g0126 731 PANTHER OS10G0464500 PROTEIN 3 713 - -
Lal13g0126 731 SUPERFAMILY RING/U-box 76 132 - -
Lal13g0126 731 Pfam von Willebrand factor type A domain 284 468 IPR002035 -
Lal13g0126 731 Pfam VWA / Hh protein intein-like 633 706 IPR032838 -
Lal13g0126 731 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 713 - -
Lal13g0126 731 ProSiteProfiles Zinc finger RING-type profile. 82 126 IPR001841 -
Lal13g0126 731 CDD vWA_C3HC4_type 283 457 - -
Lal13g0126 731 SMART VWA_4 282 469 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0126 Lal-Chr13 787803 792589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0126 71 127 C3H Transcription Factor Family AT1G57730 40.351 7.62e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0126 - - gmx:100813569 1113.21