Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0118 ATGGGTAAAGAGAAGGTTCATATCAACATTGTTGTCATTGGCCATGTCGACTCTGGAAAGTCAACAACCACCGGTCATCTGATATACAAGTTGGGAGGTATTGACAAGCGTGTTATCGAGAGATTTGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCCTTCAAGTACGCCTGGGTGCTTGACAAACTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCTGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCCCAGGCTGACTGTGCTGTTCTTATCATTGATTCCACCACTGGTGGTTTTGAGGCCGGTATTTCCAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCTTTCACTCTTGGTGTGAAACAGATGATCTGTTGTTGTAACAAGATGGATGCCACTACACCTAAGTACTCCAAGGCTAGGTATGATGAAATCATTAAGGAAGTGTCTTCTTACTTGAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTTCCCATCTCTGGTTTTGAGGGAGACAATATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGGCCAACAGACAAGCCCCTCCGATTACCCCTCCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTGTTGTGAAGCCAGGAATGGTGGTTACTTTTGGCCCAACTGGATTGACCACTGAAGTTAAGTCTGTTGAAATGCACCATGAAGCACTTCAAGAGGCCCTTCCGGGTGACAATGTTGGATTCAATGTTAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAACTCTAAGGACGATCCTGCCAAGGAGGCTGCTAACTTTACATCCCAAGTTATCATCATGAATCACCCCGGACAGATTGGAAATGGTTATGCCCCAGTTCTTGATTGCCACACTTCCCACATTGCTGTCAAGTTTGCCGAACTTGTGACCAAGATTGACAGGCGATCTGGTAAAGAGATTGAGAAGGAACCCAAATTTTTGAAGAATGGAGATGCTGGACTTGTGAAGATGGTTCCCACCAAGCCCATGGTGGTTGAAACTTTTGCTGAGTACCCACCACTTGGTCGTTTTGCTGTGAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGAGTGTGGAGAAGAAGGATCCCTCTGGAGCCAAGGTCACCAAGGCTGCAGCAAAGAAGAAGTGA 1344 0.4628 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGLVKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKAAAKKK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0118 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Lal13g0118 447 Gene3D Translation factors 323 430 - -
Lal13g0118 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Lal13g0118 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Lal13g0118 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Lal13g0118 447 Gene3D Translation factors 229 316 - -
Lal13g0118 447 CDD EF1_alpha_II 230 320 - -
Lal13g0118 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lal13g0118 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Lal13g0118 447 Gene3D - 1 226 IPR027417 -
Lal13g0118 447 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Lal13g0118 447 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 446 - -
Lal13g0118 447 CDD EF1_alpha_III 323 426 - -
Lal13g0118 447 CDD EF1_alpha 9 227 - -
Lal13g0118 447 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lal13g0118 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lal13g0118 447 PANTHER TRANSLATION FACTOR 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0118 Lal-Chr13 738503 741039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0118 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 96.136 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0118 K03231 - rcu:8264984 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0139 12 974499 976703 Lal13g0118 13 738503 741039 ECH
Lal13g0118 13 738503 741039 Lal13g0118 13 738503 741039 ECH
Lal12g0139 12 974499 976703 Lal13g0118 13 738503 741039 LSH
Lal13g0118 13 738503 741039 Lal9g0937 9 7141559 7144094 PCT