Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0100 ATGCCAACACGAACAACAGCAACAACAGATGTAGAAACTCCCAATGAAGACTCAACCAAACAAACCCTTCACCCTTTATTCTCTCCTTCTTACCCAATCACTCTCAAGTTCATGGACGTGAAGAAGATAGACAATAATAATAATAATAATAATAAAAGAGGGTCCTTCATTAAGGCTATCTTTGAATCATCACAACCGTCAGATCAAATTATATCTACGGAAGACCGATTCATTTTGAAATCCGTAACGGGAATAGCGTACCCGGGTGAGATCTTAGCCATCCTTGGTCCATCAGGTAGCGGAAAATCAACTCTCTTAAATGCTCTCTCAGGGAGACTCCATGGACACTCCCTCACAGGAACAATCCTCGCTAACTCCTTCAAATTAACCAAACCGGTTCTCCGTCGAACCGGGTTCGTCACCCAAGACGACATCCTCTACCCTCACCTCACGGTTCGCGAGACCCTCGTCTTCTGCTCCATGCTCCGCCTCCCGAGGAACCTACCGCGAGAGGCTAAGATCGCGGCGGCGGAGTCGCTCATCGTCGAATTAGGGTTATCAAAGTGTCAGGACACTATAATCGGAAATAGTTTCATCCGTGGCGTCTCCGGCGGTGAACGGAAGCGCGTGAGTATAGCGCATGAGATGCTGGTGGACCCGAGTTTGCTGATCCTGGATGAGCCTACCTCAGGGCTGGATTCGACGGCGGCGCATCGGCTGGTGACGACGCTGAGGGGGCTGGCGAAGAAGGGGAAGACGGTGGTGACGTCGGTGCATCAACCGTCCAGTTGCGTCTACCAGATGTTCGATAAGGTGCTAGTGCTTTCGGAAGGACAGTGTTTGTACTACGGCAAAGGAAACGGTGCTATGCGCTACTTCGAGTCGATTGGGTTCGCTCCATCTTTTCCGGTTAATCCCGCCGATTTTCTGCTCGATCTCGCTAACGGTGTTTGCCATGTTGATGGTGTAGCTGAAAGAGATAGGCCAAACATTAAGCAGAACCTAATTCATTCATACAACACTATACTGGCTCCTAAGGTAAAAGCTGCCTGCATGGACACTGCCAGTGTTCCTAACAAAAACACTCACCCTTTAGGAAACAACCCTTCAAAAGAATGGAGACATGGTGACAGGGTTAGCTTATTAGATTGGTTCAACCAGTTTAGTATTCTGCTCCATAGAAGCATCAAAGAAAGAAAACATGAATCATTCAATACACTAAGAGTCTTTCAAGTTCTTGCTGCAGCACTATTAGCTGGTTTAATGTGGTGGCAATCAGACTATAGGAATGTTCAAGATAGGCTTGGTTTGCTCTTTTTCATTTCCATATTTTGGGGAGTCTTCCCATCTTTCAACTCTGTTTTTGCATTTCCTCAAGAACGTGCCATCTTTATGAAAGAGAGGGCTTCTGGTATGTACACATTGTCTTCCTATTTTATGGCTAGAATTGTTGGAGACCTTCCCATGGAGCTTATTCTTCCCACGGTTTTCCTCATTGTGACATATTGGATGGGTGGATTAAATCCTGATTTATGGTCTTTTGTGTTGACTTTGTTGGTTGTTCTTGGATATGTGCTTGTGTCACAAGGTCTTGGACTTGCTTTAGGTGCTGCAATCATGGATGCCAAACAGGCTTCCACAGTAGCAACAGTGACAATGTTAGCATTTGTCTTAACAGGTGGCTACTATGTCCATAAGGTGCCACCTTGTATGGCTTGGATCAAATACATTTCCACAACCTTTTACAGTTATAGGCTTCTGATAAGAATCCAATATGGTGATGGCAACAAAATCTTATATCTGTTGGGATGCTATCATGGTGGGAGTGATAGGGCCAGCTGCAAGTTTGTTGAAGAAGATGTAGTGGAGCAAATTAGCACTGTGGGAAGTATTGGGGTGTTATTTCTCATGTTTGTGGGTTATAGATTATTGGCCTACCTTGCCTTGAGGAGCATCAAGAGTTGA 1965 0.455 MPTRTTATTDVETPNEDSTKQTLHPLFSPSYPITLKFMDVKKIDNNNNNNNKRGSFIKAIFESSQPSDQIISTEDRFILKSVTGIAYPGEILAILGPSGSGKSTLLNALSGRLHGHSLTGTILANSFKLTKPVLRRTGFVTQDDILYPHLTVRETLVFCSMLRLPRNLPREAKIAAAESLIVELGLSKCQDTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLILDEPTSGLDSTAAHRLVTTLRGLAKKGKTVVTSVHQPSSCVYQMFDKVLVLSEGQCLYYGKGNGAMRYFESIGFAPSFPVNPADFLLDLANGVCHVDGVAERDRPNIKQNLIHSYNTILAPKVKAACMDTASVPNKNTHPLGNNPSKEWRHGDRVSLLDWFNQFSILLHRSIKERKHESFNTLRVFQVLAAALLAGLMWWQSDYRNVQDRLGLLFFISIFWGVFPSFNSVFAFPQERAIFMKERASGMYTLSSYFMARIVGDLPMELILPTVFLIVTYWMGGLNPDLWSFVLTLLVVLGYVLVSQGLGLALGAAIMDAKQASTVATVTMLAFVLTGGYYVHKVPPCMAWIKYISTTFYSYRLLIRIQYGDGNKILYLLGCYHGGSDRASCKFVEEDVVEQISTVGSIGVLFLMFVGYRLLAYLALRSIKS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0100 654 CDD ABCG_EPDR 64 284 - -
Lal13g0100 654 Pfam ABC transporter 80 230 IPR003439 GO:0005524
Lal13g0100 654 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 11 652 - -
Lal13g0100 654 Pfam ABC-2 type transporter 259 336 IPR043926 GO:0140359
Lal13g0100 654 MobiDBLite consensus disorder prediction 1 22 - -
Lal13g0100 654 SMART AAA_5 88 279 IPR003593 -
Lal13g0100 654 PANTHER ABC TRANSPORTER G FAMILY MEMBER 25 11 652 - -
Lal13g0100 654 Pfam ABC-2 type transporter 387 591 IPR013525 GO:0016020|GO:0140359
Lal13g0100 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 295 IPR027417 -
Lal13g0100 654 Gene3D - 68 295 IPR027417 -
Lal13g0100 654 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 302 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0100 Lal-Chr13 633711 639918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0100 89 278 Calmodulin-binding Proteins AT2G36910 30.412 4.00e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0100 K05681 - gmx:100812127 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g0100 13 633711 639918 Lal13g0100 13 633711 639918 ECH
Lal13g0100 13 633711 639918 Lal24g0095 24 626460 631320 LSH