Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g0098 ATGGATGACATTTTGATTTCAGCTCCCACAGTCAAAGGGTCTGGAGAATGTGGGGTTTTATATTTGGCAGAGCCACTTGATGCATGTACAGAACTGACAAATAAAGCTGAACATCTTTCAAATGTGAGTTCACCTTTTGTTTTGGTGGTTAGAGGAGGATGTAGCTTTGAGGAAAAGCTCAGAAGTGCACAAAGAGCTGGATACAAAGCTGCAATTATCTATGACAATGAAGATAGTGATGTCTTGGTTGCAATGGCCGGAAACTCTGCTGGTATAAGAATACACGCTGTATTTGTATCAACAACTTCAGGTGAAATACTAAAGAAATATGCTGGATCTGCTAATGTGGAACTATGGCTCATTGAAAATTTTGAAAACTCAGTTTGGTCTGTCATGGCAATTTCATTTATCTCTCTACTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTCAGGAGGCATCGTATAAGAAGAGAAAGGCCCCGAGCTTCTCATGTTCGCGAGTTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAACTTTGATATTTAATGCTGTTTTAGAAGATAACTACTGCACATCCAGAACATGTGCTATATGCCTTGAGGACTACTGTGTTGGAGATAAACTTAGGGTTCTGCCCTGCTGTCATAAATTTCATGCTGTCTGTGTGGATTCATGGCTTACTTCATGGAGAACCTTTTGCCCAGTTTGTAAGCGTGACGCGAGAACTGGTTTAACCGATCCACCACCTTCAGAATCCACACCTTTGCTTTCATCAAGCCTTGCATCCGTGGCATCCTCTATCTTATCTTCTGGGAGGTCGTCATTAGCATCATCTTCGGCAATACAAATTGCCCATGGACCATCACAGTCCCCTTCTGTTTCTCGCAACCACTCTTTAGCTAGTATGTCCTATGTTCAGTCATCTTTCAGGTCTTACCGTCAGTCGCCCTCCCTAAGCATCAGCCGAAGCTCTGTAGATCATAGGAACGGATCCCAAAGATCTCTAGCATCTCACTTGAATTTACCATGTTCAACGGGTTACCCATCTTTGTCATCTCTTAACTCAAGGTATATGTCTCCATACATACCAAGTCCAAGCAATGCTTCAGTAGGTTACATGGGTTCCTCTAGTCACCAACAGCATCCGCTTCGTTATAGCGAGTCAGCCGCGACCTTCTCACCATTTGTATCTGCTAACTCCCTTCCTGAAGTTTAA 1230 0.4325 MDDILISAPTVKGSGECGVLYLAEPLDACTELTNKAEHLSNVSSPFVLVVRGGCSFEEKLRSAQRAGYKAAIIYDNEDSDVLVAMAGNSAGIRIHAVFVSTTSGEILKKYAGSANVELWLIENFENSVWSVMAISFISLLAMSAVLATCFFVRRHRIRRERPRASHVREFHGMSSRLVKAMPTLIFNAVLEDNYCTSRTCAICLEDYCVGDKLRVLPCCHKFHAVCVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSLASVASSILSSGRSSLASSSAIQIAHGPSQSPSVSRNHSLASMSYVQSSFRSYRQSPSLSISRSSVDHRNGSQRSLASHLNLPCSTGYPSLSSLNSRYMSPYIPSPSNASVGYMGSSSHQQHPLRYSESAATFSPFVSANSLPEV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g0098 409 SUPERFAMILY RING/U-box 189 252 - -
Lal13g0098 409 Gene3D - 6 122 - -
Lal13g0098 409 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 8 346 - -
Lal13g0098 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 247 IPR013083 -
Lal13g0098 409 CDD PA_C_RZF_like 9 126 IPR044744 -
Lal13g0098 409 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 8 346 - -
Lal13g0098 409 SMART ring_2 200 241 IPR001841 -
Lal13g0098 409 CDD mRING-H2-C3H2C2D_ZSWM2 199 242 - -
Lal13g0098 409 Pfam Ring finger domain 199 242 IPR001841 -
Lal13g0098 409 ProSiteProfiles Zinc finger RING-type profile. 200 242 IPR001841 -
Lal13g0098 409 Pfam PA domain 26 107 IPR003137 -
Lal13g0098 409 SUPERFAMILY PA domain 41 117 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g0098 Lal-Chr13 624009 627560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g0098 16 408 C3H Transcription Factor Family AT1G22670 48.507 1.60e-108 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g0098 K15692 - gmx:100791248 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0122 12 840381 845018 Lal13g0098 13 624009 627560 LSH
Lal13g0098 13 624009 627560 Lal24g0093 24 617411 622912 LSH